Larimichthys crocea (large yellow croaker): 104930911
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Entry
104930911 CDS
T04659
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
lco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104930911
03015 mRNA surveillance pathway
104930911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104930911
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104930911
5.6.2.5 RNA 5'-3' helicase
104930911
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104930911
mRNA cycle factors
Common to processing body (P body) and stress granule
104930911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
AAA_16
nSTAND3
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
104930911
NCBI-ProteinID:
XP_027146111
LinkDB
All DBs
Position
XVII:29275866..29289603
Genome browser
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVEDSVAKASQLLAELNFEEDEEDTYYTKDLPSHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGGNQGASQGNGPN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctctcagaccctcaccttcctggacaccgaggaa
gcggagttgctcggagcggacacccagggctccgagtacgacttcaccgattttaccctt
cccagccagacgcaaactcaaggccagacccagagccagctggacaaccaggtgaacggt
cccgatgaaggtcttcacaacggcggcgtggaggactcggtggccaaagccagccagctg
ttggccgagctgaactttgaggaggatgaagaggacacatactacaccaaagacctgcct
tcacacgcgtgcagctactgtggtatccacgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagtcacattgttaaccac
ctggtgagagccaaatgcaaagaggtgacactgcataaagatgggccactgggcgagacg
gtgctggagtgttacaactgtggctgtcgcaacgtcttcctcctgggcttcatcccggcc
aaggccgattctgtggtggtgctactctgcaggcagccctgtgccagtcagagtagcctg
aaggacatcaactgggacagctcgcagtggcaaccactgatccaggaccgctgctttctg
tcctggctggtgaagatcccatcagagcaggagcagcttcgggcccgtcagatcaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccagcgccaccttggaagac
ctggagaaaccgggagtggacgaggagccccagcatgtgctgctgcgatatgaggacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggccgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgcggtacaagggagacctggctccgctgtggaaaggaatcggc
catgtcatcaaagtccctgacaactacggggatgaaattgccattgagttgaggagcagt
gtgggagcacctgtggaaatcccccacaacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcagagtgccctgaagacatttgcggtggatgaaacctccgtctct
ggctatatttaccacaaactgctgggccacgaagtcgaggatgttaccatcaagtgccag
ctgccaaagcgcttcactgcccaaggcctgcccgacctcaatcactcacaggtgtatgct
gtgaagacggtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaaa
actgtcacttctgctaccattgtctatcacctgtctagacaaggcaatggaccagtcctg
gtgtgtgctcccagtaacattgctgtggaccagttgactgagaagattgacaagactgga
ctgaaggtcgtcaggctgtgtgccaagagccgcgaggccatcgagtcaccagtgtccttc
ctggctctgcataaccagatcagcaacatggacagcatgccagagcttcagaaactgcag
cagctgaaggatgagactggcgagctgtcatctgctgatgagaagcgctacagggctttg
aaacgcactgctgagagggagctgctcatgaatgctgatgttatctgttgtacctgcgtt
ggggctggtgatcctcgtctggccaagatgcagttccgctccatcctgattgacgagagc
acccaggccactgagccagagtgtatggtccctgtggtgctgggagctaagcagctcatt
ctggtgggtgatcactgccagttgggtcctgtggtgatgtgtaagaaggcagccaaagca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggatccggccaatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggcgtcactgcagccgaccgcatcaagaaaggctttgacttccag
tggcctcagccagacaagcccatgtttttctacgtgactcagggtcaggaggagattgcc
agctctggaacatcgtaccttaacaggactgaggctgccaacgtagagaaaattaccaca
aggctgctgaaggctggagccaaacctgaccagattggcatcatcaccccgtatgaggga
cagcgctcctatttggtgcagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagcgtggacgccttccaaggcagagagaaggatttcatcatc
ctgtcttgtgttcgtgccaatgagcaccagggcatcggctttctgaatgacccacgccgt
ctcaacgtggcgttgacccgagccaagtatggtgtgatcatcgtggggaaccccaaggcg
ctctccaagcagccgctctggaacaacctgctgaacaactacaaggagcagaaagtcctt
gtggagggacctctcaataacctgagggagagtctcatgcagttcagcaagccccgcaaa
ctggtcaacaccatcaaccctgggggacgttttatgagcactgcgatgtacgatgcccgt
gaagccctcatccctggctctgcctacgatcgcagcaacgctgctggacgtccgtccaac
atgtactttcaaactcacgaccagattgggatgattggagcggggcctggtcacatggcc
gccatgaatattcccatacccttcaacctggtgatgccaccaatgcccccccccagttac
ctgggtcagaccaacggccctgctgcagggcgtggagctatgaagggtaagcctgggcgt
ggcgggcgacagagggtccgtggaggaaaccagggtgccagtcagggtaatggaccaaac
agtcaggccagccaggatggggcctcccagtccttctcccaggggccactgacacagggc
tacatctccatgagccagccttctcagatgagccaacctggcctctcccaaccggaactg
tcccaggacagctacctgggcgacgagttcaagtcccaaatcgatgtggctttgtcccag
gactcgacttaccagggcgaacgtgcataccagcatggtggggtaactggactgtcacag
tactag
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