Larimichthys crocea (large yellow croaker): 104931921
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Entry
104931921 CDS
T04659
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lco01002
]
104931921 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104931921 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104931921 (usp13)
Enzymes [BR:
lco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104931921 (usp13)
Peptidases and inhibitors [BR:
lco01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104931921 (usp13)
Ubiquitin system [BR:
lco04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104931921 (usp13)
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104931921 (usp13)
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Gene cluster
GFIT
Motif
Pfam:
UCH
UBA
zf-UBP_var
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
104931921
NCBI-ProteinID:
XP_019114505
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Position
XVII:complement(21579471..21607310)
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AA seq
863 aa
AA seq
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MATDLGELLVPYMPTIRVPRTGDRVFKSECAFSFDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKEKATGAAGGAIPRRRNGKVFLDLELNRDFNGEDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAVLNAPSAYKKQEPESWEEEIQVSRHARSLRQLD
NGVRIPPSGWKCQKCEMRENLWLNLTDGAVLCGKWFFDGSGGNGHALEHYRATNYPLAVK
LDTITPDGADVYSFEEEEAVLDPHISDHLSHFGIDMLQMQKRTENGHHTDNNPRPRVSEW
EVIQESGMKLKAVFGSGYTGIKNLGNSCYISTVLQVLFSIPDFQRMYVGNLQRIFDYSPL
DPSQDFATQMAKLGHGLLSGQYAKPPMKSELIEQVMKEEYKVLNWHQQKGVSPRMLKSLV
SQGHPEFSSNRQQDAHEFLLHMINQVERNSAGSENPSDAFRFLVEERIQCCQSRRVRYTQ
RVDYCIQLPAPIEAATNREELLAYEVKRKEAEDNMRAPPEPVRARIPFTACLQAFTEPEN
VPDFWSSALQAKSAGVKTSRFASFPEYLILQIKKFTFGVDWVPKKLDLAIDVPDFLDLSR
MRATGLQAGEEELPDLMPPIVLPEDTRDNSMSSIDSPEIDETAVMQLAEMGFPLEACRKA
VYYTGNMGPEMAFNWIIAHMEEPDFAEPLTLPSMIDPGPSTSDSPMGATPLGNSPPEESI
SILTSMGFPRAHSIQALKATNNNLERALDWIFTHPEEEESDALSDMADTEPNDNAFSNAN
SHSDSTLSPDRDTSGPRIKDGPGRYELFAFISHMGASTMSGHYVCHIKKEGRWVIYNDHK
VCLSERPPKDLGYIYFYHRLSSS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctacagacctaggagagctgctggtcccgtacatgcccacgatcagggtgcccagg
actggagacagggttttcaagagcgagtgcgctttttccttcgactctcctgagtcagag
ggaggcctgtatgtgtgtatgaacacattcctgggctttggacgagaacatgtggagagg
cattatcgcaaaacaggacagagtgtttacatgcacctcaaacgacatgtcaaagagaaa
gcgacaggagctgcaggaggtgccatccccagacgaagaaatggaaaagtgtttctagat
ttagagcttaaccgcgattttaacggagaggactatgaatacgaagacgaggccaagctt
gtcatttttccagaccacttcgagatccctttaccaaatattgaggagttgcccgctctg
gtaaccatcgcctgtgacgctgtgctcaatgctccatcagcttacaaaaagcaggagcct
gaatcctgggaggaggagattcaggtttccagacatgccaggagcctcagacagctggat
aacggggtcaggatcccacccagtggctggaagtgtcagaagtgtgagatgagagaaaac
ctgtggctgaacctgacggatggagcagtgctctgtgggaagtggttctttgatgggagc
ggaggcaatggccacgctctggagcactacagagcgaccaactaccccctggctgtcaaa
ctggacaccatcactccagatggagcagatgtctactcatttgaggaggaggaagctgtg
ttggacccccacatatcagaccacttgtcacactttggaatagacatgctacagatgcag
aaaagaacagagaatggtcaccacacagacaataacccccggccacgggtcagtgaatgg
gaggtgatccaggagtcgggaatgaagctgaaggcggtgtttggttctggttacacgggc
atcaaaaacctgggcaacagctgctacatcagcacagtgcttcaggtcctcttcagcatc
ccagatttccagaggatgtatgtgggtaaccttcagaggatatttgactattcacctctt
gaccccagccaggacttcgccacacaaatggctaaactgggacacggactgctctcaggc
cagtacgccaaaccacccatgaaatctgagctcattgaacaggtgatgaaagaagaatac
aaggtattaaactggcaccagcagaagggcgtctctccccggatgttaaagtccctggtc
agccagggacaccccgagttttcctccaacagacaacaagatgcccatgagttcctcctg
cacatgatcaaccaggtggagaggaacagcgctggatcagagaatccaagcgacgccttc
cgcttcctggtggaggagcggattcagtgctgccagtcacgtcgggttcgttacactcag
cgggtggattactgcatccagctgccagcccccattgaggcggccaccaatcgagaggag
cttctggcatacgaggtcaagcggaaggaggctgaggacaacatgcgggctccacctgag
ccggtaagagcgcggatccccttcaccgcatgcctgcaggccttcacggagcctgaaaac
gtccctgacttctggagctcagcgctgcaggccaaatcagccggtgtcaaaacttcccgt
ttcgcctccttcccagagtatctgattttgcagatcaagaaattcacattcggggtcgac
tgggtgccgaagaaactagacttggccatagatgttccagactttctggatctgagcagg
atgcgggccacagggctgcaggcaggtgaagaggagctgcccgacctcatgccacccatc
gttctacctgaagacaccagagataactccatgagctccatagactctccagaaatagac
gagacggcagtaatgcaactggcagaaatgggctttccactggaggcctgtaggaaggcg
gtctactacacaggaaacatgggcccagagatggccttcaactggattatagcccacatg
gaggagcctgactttgcagaacctctcactctgccctccatgatagatcctggtccctcc
accagtgacagccccatgggtgccacgccgctaggcaactcgccccctgaggagagcatc
tccatcctcacttcaatgggcttcccccgcgctcacagcatccaggcactcaaagccacg
aacaacaacctcgagcgagcactcgactggatcttcacccaccctgaggaggaggagagt
gacgccctttcagacatggcggacacggagcccaacgacaacgctttctccaacgccaac
tcacacagcgactccacgctgtccccagacagagacacgtcgggcccacggatcaaagac
ggaccaggacgttatgagctctttgctttcatcagtcacatgggagcatccacaatgtct
ggacattatgtctgtcacatcaaaaaggagggaaggtgggtgatctacaacgaccacaaa
gtgtgtttgtcagaaaggcctccaaaagacttgggctacatctacttttaccatcgactg
tctagcagttaa
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