Larimichthys crocea (large yellow croaker): 104933715
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Entry
104933715 CDS
T04659
Symbol
nlrc5
Name
(RefSeq) protein NLRC5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lco04054
]
104933715 (nlrc5)
Pattern recognition receptors [BR:
lco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104933715 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_6
LRR_4
Atypical_Card
NOD2_WH
LRR_8
ABC_tran
RsgA_GTPase
AAA_25
AAA_22
Motif
Other DBs
NCBI-GeneID:
104933715
NCBI-ProteinID:
XP_027128364
LinkDB
All DBs
Position
XXI:9903435..9934495
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AA seq
1896 aa
AA seq
DB search
MDEELDPDDKNVNSVLAQEFTELLAILSRQSTEVIMKLCQMMPGDAGWNIIQPASSSAEL
TKHIKTMLDYFMLANAADCRKFLEAMCMLCEDIPMHLESRLMSVAGYANDDCESSSPTLK
EEMPTSPLSERQLVKRPRIDHWEQYIAAVVPLLLKRWERLSEHLVGKVLLENVWVSPRTV
NRGRDRPDQTPGPGDRGSRTPGISLISEPDGDYGSLETRVTLETFLQGCAGKVTVLLGQS
GSGKTLLMSSLGQQWARRLGPIPSSFLFVLLEFRQLNFVSRPLSLSDLLFRHYLPLKGDD
DEKRSIVDYLISNPEQICWVLDGYDEFHSKLTRQQVQKKVLDPKKPLPVADLISGLLNRQ
LLPGCTVVVTCRARDVTDLEGVSDKVGQLLGWDCNEIKEYVHNFFAAKGHGTGRALGRQA
ADLLLSTQHLLAMSSLPALCNICCICLEYLLLEERDDEKGSMTREKAREKGVQMPGGGRG
GGGDKVMDVTNGEAQLPFTPAQIFSTHTQVYLTVLGAFLSCDPEKRGRNDTPKNMTTQQS
IVHTLSQYQPELCELSQLAWKGLEGGKIVFLEEDISQDVLKFSIRTGLFSQVELRREDGT
LVNSYSFIHLTIQEFLAALRVMTSQEVSDTQLKKRFSLKTRWMTKSDQRTVFTDSLHLYV
CGLASPHCTEALVQLATTSGGTGGSNWVQKRQALVVKLLKNLCNSNTLTGPKVLELCHCV
QESQNQQLAQQVVGTRRTLELRNIRVLPSDIDALAFVVNSVGDNGIGLDFGACSMELECL
DVLPRCQYIHYLCFRSRKYGDKFAEKLSSILPNFTTLRKFGFCGASLTTTGAACLASALQ
KCPDITEINLSDNNLKDAGIEHVADVFTKLPRLESLMLGRNNSSLKAVDYLIGKMSSCSN
IQRIFADGMKELEVTFSQNSDFNSHKTKSEPTISLLNQKWSKPEMQTIAEALACCPTLSV
LDLTGGQWDVETLKMLTQFLPKFKVTQKIILNDSCSSVKDLVILTALLPGCPAVRELHIR
LQSPVQVSIVFSERKEREKPAESAERSKMLCLSRCGLLPPDMQRVWRSLGTSSDLTLLDL
SNNSLGNKGLKKLLDILPHLSNIQEIDASNNGIGMEGVVMLAGALCSHNNLTQIHISHGG
SEQVTLKFSPDESHDKIRMFRTNYSNLEPSHVTTLCKRLAQCRSHLELDLSHSSLTAEAI
GNLLKILPKMKSLQRLDVSHSITSTAAAVILVSCLTVSERVTSVVLRPQTEETESFIHFD
SVKAEHASCSLTHFSWNDVNLERLLKILQQGPRLSHLDLSSNQLEDKGVKRFLDSLPKLK
ITSWVNLSNNSLTQQGLLNAASTLRACGNVSGVEVCMGAEERCLIWFTQCEDCDKTLSIS
ESSLERDHLVRLAEICPSLTKLELKNNSLDSDWIEDFVRLLNSNERGFSVSFEERSIRSE
EAIDLVCRCLDHNHNIHSIKVRYNTLHLSLLKSTGLTSLSLVNCAVKGYQLEPLMSIIQK
CPLLTELDFSHNTLGLDGAVFLCTILPLLPNLTSLSIGSKETCVVEEISEALLQATAIQC
LNLAGHVIGDPAVQTMTRMFPRLRSLNLSHCARSPAGGLQLIKALGECAGLEGLCLDSWQ
LNEESVACLAQSLRKINSIRCLKLNKVAAAVGQSGANSLLDLLSAMEGLTRIEEIGLEGW
RMADRGIEQLIRLLPFWTELRKISLSENLISDQSGDKLLQAMISCSHLEELHVWSNRLGN
LTAARMALVLPSLTHITVLNISENCLGPEGSTSLSKAIMCMKNLTKILLTSVGTPELCAV
AASLAHCPLIQDVGLGWNNCGDDVAVELSRVMPLCQKLNRIDLESNSVSVIGAEALVRAL
QSCPALQFIRLWRNKVSSSEVQRLLLQDRRLNFSST
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggagcttgaccctgatgacaaaaacgtgaactccgtcttggcacaggaattc
acagaactgctcgccatccttagcaggcagtcgacggaagtcataatgaagttgtgccaa
atgatgcccggtgatgccgggtggaacatcatacaacctgcgtcttcttcagccgaacta
acaaaacacatcaaaaccatgttggattacttcatgttggctaacgctgcagattgccgt
aaattcctcgaggccatgtgcatgttgtgtgaggatatccccatgcacctggagtcgagg
ctcatgtcagtggcagggtatgcaaacgatgactgtgaaagttccagtcccactttgaag
gaggagatgccaacatcgccgctttcagagcgtcagctcgtcaaacgcccacgaattgac
cattgggaacaatacattgctgcagtggtgcctttactgctgaagaggtgggagcgactc
agtgagcacctggtgggaaaggtcctgctggagaatgtgtgggtcagcccgagaacggtg
aacagaggcagggacagacctgatcaaaccccaggaccaggagacagagggagcagaaca
ccaggtatttcactaatctcagaacccgatggcgattatgggtctttggagaccagagtg
acgttggagacgttcctccagggatgtgcaggaaaggtgacagttctccttggccagtct
ggatcaggaaaaactttgctgatgtctagtttgggacaacagtgggcacgtagacttggc
cctatcccttcatccttcctgtttgtcctgctcgagtttcgtcaactcaactttgtgtcc
cgtcctctttccctgtctgatctgctattccgacactacctccctctaaaaggggacgac
gatgaaaagagaagcattgtggattacctcatttccaatccagagcaaatctgttgggtg
ctggatggctatgatgagtttcatagcaaactcaccagacaacaggtgcagaaaaaggtt
ttggacccaaaaaaacctctgccagttgctgacctcatctcagggttgttaaatcgtcag
cttctaccaggatgtaccgtggtggtcacctgtcgtgcacgtgatgtcactgatttggaa
ggcgtatcagataaagtggggcagctgctggggtgggactgcaatgagatcaaggagtat
gtacacaacttctttgcagcaaaaggtcacggcacaggcagagctcttgggaggcaggca
gcagacctccttctttccactcaacacctccttgccatgtcatccctccctgccctctgc
aacatctgctgcatctgtctggagtatttactgctggaagaaagagacgacgaaaaggga
agcatgacgagggaaaaagccagagaaaaaggagtacaaatgccaggaggaggaagagga
gggggtggagacaaagtgatggatgtaacaaatggtgaagcccagctacctttcacacca
gcccagatattctccacccatacccaggtctatctcactgttcttggtgcgtttctgagc
tgtgaccctgagaaaagggggagaaatgacacaccaaagaacatgacaacccaacagagc
attgtgcatacgctgagtcagtatcaacctgagttgtgtgagctgagtcagctggcctgg
aaaggcttggagggcggcaagatcgtcttcctggaggaagacatttctcaggatgtgttg
aagttttcaataaggacggggcttttctcacaggtggagcttagacgtgaggatgggact
ctcgtcaactcctacagtttcattcatctgacaatacaggagtttttggctgcactcaga
gtcatgaccagtcaggaagttagtgacacgcagctcaagaagagattcagcttgaaaacc
cgttggatgaccaaatcagaccagaggacagtctttactgactccctgcacctgtatgta
tgtggtctggcttccccacactgtactgaagccttagttcaattagccacaacctcaggt
ggaacaggaggctccaactgggtccagaaacggcaagcccttgttgtaaaactgctaaaa
aacctgtgtaacagcaacaccctgactggaccaaaggtattggagctttgtcactgtgtc
caggagagccagaaccaacaactggctcagcaggtcgtgggcacaagacgcaccctggag
ctacgcaacatccgagtcttacctagtgatatcgacgctctagcttttgtagttaactca
gtaggtgataatggcatcggattggactttggagcatgctcaatggagttggagtgttta
gatgtcctgccaagatgtcagtacattcactacctctgttttcggagccgcaagtatggt
gacaagtttgccgagaagttgtcctccattttgccaaatttcacaacactgagaaaattt
gggttttgtggtgccagtctgaccaccacaggagccgcttgtttggcttctgctctacag
aaatgtccagacatcactgaaatcaatttgagtgacaacaatctgaaagacgcagggatc
gaacatgtggccgatgtttttaccaaactaccaagactagagtctttaatgctgggtcga
aacaacagctctctaaaagcagtggactatctcatcgggaaaatgtcttcatgttcgaac
atccagcgcatttttgcagatggaatgaaggaattagaagttactttctcccaaaactcc
gactttaacagccacaaaacaaagtctgaaccaacaatcagcttgttgaaccagaaatgg
agcaagcctgagatgcaaacaattgcagaggcattggcttgttgccccaccttgtctgtc
ctggatctgactggaggccagtgggatgtggaaactctgaagatgctgactcagtttttg
ccaaagtttaaggtcactcaaaagatcattttgaatgacagctgctcttcagtgaaggat
ttggtcattctgaccgctcttctgcctggctgtcctgctgtgagggagcttcatatcaga
ctgcagagtcctgtccaggtgtctatagtgttctcagaaagaaaagagagagaaaaacct
gctgagtcagctgaaagatctaaaatgctctgtctcagccgctgtggtctgctgcctcct
gatatgcagagagtgtggaggagtttgggaacatcctcggatctcacattgctcgatctg
tccaataactctttaggcaacaaaggtctgaagaaactgctggacatcctgcctcatctg
agcaacatccaggagatcgatgccagtaacaatgggatcggcatggaaggagtggtgatg
ctggctggcgctttgtgttcccataacaacttgacacagatccacatcagtcatggaggc
agtgagcaggtgaccctgaagttctcccctgatgaaagccacgacaaaatacggatgttc
aggacgaactacagcaacctcgagccgtctcatgtaaccacgctttgtaaaagattggcc
cagtgtcgctcccatttggagttagatttgtctcacagctcactgacagccgaggctatc
gggaatctgctgaagatcctgccgaagatgaagtcactgcagagactcgatgtcagccac
agcatcacgtccacggctgcagcggtgatattagtcagctgtttgaccgtcagtgagcgg
gtcacgtcagtagtgctcaggcctcagactgaagagactgaatccttcatccattttgac
agcgtgaaagcagaacacgccagctgcagcttaactcattttagctggaatgatgtcaat
ttggagagactgctcaagatcctacagcagggtcctcgcctttctcacctggatttatca
agtaaccagctggaagataaaggagtgaagcgttttttggattctctgccaaagcttaag
atcaccagctgggtcaatttgagcaacaacagtctgacccagcaggggctgttgaatgcg
gccagcacactgcgtgcttgtggtaacgtctctggtgtggaagtctgtatgggagcagag
gagaggtgtctcatctggtttacacaatgtgaagactgtgataaaactctgagcatcagt
gagagtagtttggaacgtgatcatctggtcagattagcagagatctgtcccagtttgacc
aaactggagctcaagaacaattcgctggactcggattggattgaagactttgtgagactg
ctcaacagcaatgagagaggattcagtgtcagttttgaggagcgtagtattagatctgag
gaagccattgatctggtgtgtcgctgtctggaccacaaccacaacatacactctatcaag
gttcgctacaacacgctgcacctgtctctgttgaagtccactggactgacttcactcagc
cttgtgaactgtgcagtaaagggataccagcttgaacctttgatgagcatcatccagaag
tgtcctttgctgacagagctggatttttcccacaacaccctgggtctggacggagctgtg
tttctctgcactattctacccttgctgccaaatctgacttctctcagcattggttccaaa
gagacttgtgtggtcgaggagatttcagaggccctgctgcaggcgacagccattcagtgc
ttaaatctggcaggtcatgtaattggcgaccctgcagtccagactatgaccagaatgttt
cctcgcctacgctcactcaacttgtctcattgcgcccggtcaccggctggagggctgcag
ctcatcaaagcactgggagagtgtgccggcctggaaggcctttgtctggactcttggcag
ctaaatgaggagagcgtcgcgtgtctggcacaatcactacggaaaatcaactccatacgc
tgtctcaagcttaacaaggttgccgcagctgtggggcaatcaggagcaaacagtctgctg
gatctcctgtctgctatggagggactaacacgaattgaggagatagggttggagggctgg
aggatggctgataggggaatagagcagctgatcagactccttcctttctggacggagctc
aggaagatcagtctctctgagaaccttatcagtgaccagtcaggagacaagctgctgcag
gcaatgatcagctgcagtcacctggaagagctccatgtgtggagtaacaggcttggcaat
ctcacagctgccaggatggctctcgttctgccatcgctgacgcacatcaccgtgttgaat
atttcagaaaactgtctcggacctgagggatcgacgagtctgtccaaagcaataatgtgc
atgaagaacctcaccaagattcttctgacctccgttgggactccagagctctgtgctgta
gctgccagtctggcccactgtcccctcatacaggatgtgggtctggggtggaataattgt
ggcgatgatgtagcagtggagttgtccagagtgatgcctctctgtcagaagctgaacagg
atagatctggagtcaaacagtgtgagtgtcattggagcggaggccctggttagagcctta
cagtcgtgtcctgctctgcagttcatcaggctgtggaggaacaaggtgtcttccagtgaa
gtccaaaggctccttctgcaggaccggaggctgaatttctcatccacgtaa
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