Larimichthys crocea (large yellow croaker): 104935405
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Entry
104935405 CDS
T04659
Name
(RefSeq) tripartite motif-containing protein 16
KO
K12006
tripartite motif-containing protein 16
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104935405
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104935405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
SPRY
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-RING_6
U-box
zf-RING_10
Prok-RING_4
Fib_alpha
DUF2383
PRP1_N
Motif
Other DBs
NCBI-GeneID:
104935405
NCBI-ProteinID:
XP_019122968
LinkDB
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Position
II:complement(3522588..3524869)
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AA seq
564 aa
AA seq
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MGEKGAQLGRETISCSICLDLLKDPVTIPCGHSYCMKCIQNFWDGEDEKRIHSCPQCRQT
FTPRPVLVKNTMLAALVEELKKTGLQAAPDDHCYAGPEDVACDVCTGRKLKALKSCLVCL
VSYCEKHLQPHYDVGPLKKHKLVEPSKKLQENICSRHDEVMKMFCRTDQQCICYLCSVDE
HKGHDTVSAAAERTERQRELEVSRLNIQQRIQDREKDVKELQQEVEAINGSADKAVEDSE
KIFTELIRLMEKRRSDVKQQVRSQQETEVSRVKDLQEKLEQEITELKRKDAELKKLSHTE
DHNQFLQNYYSLSRLSQSTDSSSINIRPLTYFEDVTAAVSELREKLQDLLREELTNISLT
VTEVHVLLSNSQPEPKTRAGFLRYSRELTLDPNTAHTQLVLSERNRKVTVISQHQSYSRH
PGRFTSYSQVLSTESLTRRCYWEVEWTGAGVYVAVTYKNIRRAGGSECGFGLNDKSWALR
CDKNSYTFWHNNVQTPVSGPQSSRVGVYLDHSAGILSFYSVSETMTLLHRVQTTFTQPLY
AGLRFYGILGILSSGDTAEFCKVK
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagaaaggagctcagctgggccgggaaactatttcttgttcgatctgtctggat
ctactgaaggatccggtgactattccctgtggacacagctactgcatgaagtgtattcaa
aacttctgggatggagaggatgagaagagaatccacagctgccctcagtgtaggcagacc
ttcacaccgaggcctgtcctggtgaaaaacaccatgttagcagctttagtggaggaactg
aagaagactggactccaagctgctcctgatgatcactgctatgctggacctgaagatgtg
gcctgtgatgtctgcactgggagaaaactgaaagctctaaagtcctgtctggtctgtctg
gtctcttactgtgagaaacaccttcagcctcattatgatgtgggtccattaaagaaacac
aagctggtggagccctccaagaagctccaggagaacatctgctctcgtcatgatgaggtg
atgaagatgttctgccgtactgatcagcagtgtatctgttatctctgctctgtggatgaa
cataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagagagagctc
gaggtgagtcgactaaacatccagcagagaatccaggacagagagaaagatgtgaaggag
ctccaacaggaggtggaggctatcaatggctctgctgataaagcagtggaggacagtgag
aagatcttcactgagctgatccgtctcatggagaaaagaaggtctgatgtgaagcagcag
gtcagatcccagcaggaaactgaagtgagtcgagtcaaagaccttcaggagaagctggag
caggagatcactgagctgaagaggaaagacgctgagctgaagaagctctcacacacagag
gaccacaaccagtttctccaaaactactactcactgtcacgactcagccaatctacagac
tcatccagcatcaatatccgtcctctgacgtactttgaggatgtgacagctgctgtgtca
gagctcagagagaaactacaggaccttctgagagaggaactgacaaacatctcactgaca
gtgactgaagtccatgttttactgtcaaattcacaaccagagcccaagaccagagctgga
ttcttaagatattcacgtgaactcacactggatccaaacacagcacacacacagctggta
ttatctgagaggaaccgaaaagtgacagtaataagtcaacatcagtcttattctcgtcac
ccaggcagattcacttcatattctcaggtcctgagcacagagagtctgactagacgttgt
tactgggaggtggagtggacaggagcaggagtttatgtagcagtcacatacaagaatatc
agaagagcagggggctcagaatgtggatttgggctcaatgacaaatcttgggcgttaaga
tgtgacaaaaacagttacacattttggcacaacaatgtccaaactcctgtctcaggtcct
cagtcctccagagttggagtgtacctggatcacagtgcaggtattctgtccttctacagc
gtctctgaaaccatgactctcctccacagagtccagaccacgttcactcagcctctctat
gctggacttcggttttatgggattttgggtattttgtcttctggagacactgcagagttt
tgtaaagtgaaatag
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