Larimichthys crocea (large yellow croaker): 109139258
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Entry
109139258 CDS
T04659
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25
KO
K12006
tripartite motif-containing protein 16
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
109139258
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109139258
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
SPRY
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-RING_10
zf-RING_6
U-box
Gp58
Prok-RING_4
PRP1_N
HpHbR
zf-RING_11
RSS_P20
LMBR1
DUF2383
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
109139258
NCBI-ProteinID:
XP_019117659
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Position
XII:complement(16034410..16036669)
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AA seq
560 aa
AA seq
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MAQQGNKLNQETFSCPICLDLLKDPVAIPCGHSYCMNCIQNFWDGEDEKRIHSCPQCRQT
FTPRPILMKNTILTALVEELKKTGLQAAPADHCYAGPEDVACDFCTGRKLKALKSCLFCL
VSYCEKHLQPHFESSAFEKHKLVEPSKKLQENICSRHDEVMKIFCRTDQQCICYLCSMDE
HKGHETVSAAAERTERQRELEVTRQNIQQRIQDREKDVNELQQEVEAINGSADKAVEDSE
KIFTELIRLMEKRMSDVKQQVRSQQETEVSRVKELQEKLEQEITELKRKDADLKKLPHTE
DHNQFLQNYPSLSQLSQTTDLSSINIRPLRYFEDVTAAVSELRDKLQDVLRDQWTNISLT
VTEVDVLLSGPKPEPKTRAEFLKYSRKLTLDPNTANTKLLLSEGNRKVTLMEQHQSYSSH
PDRFTFYNQVLSRESLTGRCYWEVEWRGKGVGVAVTYKNISRAGKSDACVFGGNDKSWRL
DCNQNSYTFWYNNNSTPVSGPLSSRVGVYLDHSAGILSFYSVSETMTLLHRVQTTFTQPL
YAGPWLSWSVGNTAELCKMK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcaaggaaataaactgaaccaggaaaccttctcttgtccgatctgtctggat
ctactgaaggatccggtggctattccctgtggacacagctactgcatgaactgtattcaa
aacttctgggatggagaggatgagaaaagaatccacagctgccctcagtgtaggcagacc
ttcacaccgaggcctatcctgatgaaaaacaccatattaacagctttagtggaggaactg
aagaagacaggactccaagctgctcctgctgatcactgctatgctggacctgaagatgtg
gcctgtgatttctgcactgggagaaaactgaaagctctgaagtcctgtctgttctgtctg
gtctcttactgtgagaaacaccttcagcctcactttgaatcctctgcctttgagaaacac
aagctggtggagccctccaagaagctacaggagaacatctgctctcgtcatgatgaggtg
atgaagatattctgccgtactgatcagcagtgtatctgttatctctgctctatggatgaa
cataaaggccatgaaacagtctcagctgcagcagaaaggactgagaggcagagagagctc
gaggtgactcgacaaaacatccagcagagaatccaggacagagagaaagatgtgaacgag
cttcaacaggaggtggaggctatcaatggctctgctgataaagcagtggaggacagtgag
aagatcttcactgagctgatccgtctcatggagaaaagaatgtctgatgtgaagcagcag
gtcagatcccagcaggaaactgaagtgagtcgagtcaaagagcttcaggagaagctggaa
caggagatcactgagctgaagaggaaagacgctgatttgaagaagctcccgcacacagag
gaccacaaccagtttctccaaaactacccctcactgtcacaactcagccaaactacagac
ttatccagcatcaatatccgtcctttgaggtactttgaggatgtgacagctgctgtgtca
gagctcagagataaactacaggacgttctgagggaccaatggacaaacatctcactgaca
gtgactgaagttgatgttttactgtcaggaccaaaaccagagcccaagaccagagctgag
ttcttaaaatattcacgtaaactcacactggatccaaacacagcaaacactaagctgtta
ttatctgaggggaacagaaaagtgacattaatggaacaacatcagtcttattctagtcac
ccagacagattcactttttataatcaggtccttagtagagagagtctgactggacgttgt
tactgggaggtggagtggagaggaaaaggagttggtgtagcagtcacatacaagaatatc
agcagagcagggaaatcagatgcatgtgtatttggaggcaatgacaaatcttggaggtta
gactgtaaccaaaacagttacacattttggtacaacaacaacagcactcctgtctcaggt
cccctgtcctccagagttggagtgtaccttgatcacagtgcaggtattctttccttctac
agtgtctctgaaaccatgactcttctccacagagtccagaccacgttcactcagcctctc
tatgctggaccttggttatcctggtctgttggaaacactgcagagttgtgtaaaatgaaa
tag
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