Larimichthys crocea (large yellow croaker): 109142900
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Entry
109142900 CDS
T04659
Name
(RefSeq) tripartite motif-containing protein 16
KO
K12006
tripartite motif-containing protein 16
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
109142900
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109142900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-B_box
zf-RING_UBOX
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
Gp58
Protocadherin
RSS_P20
ACCA
Motif
Other DBs
NCBI-GeneID:
109142900
NCBI-ProteinID:
XP_027140290
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Position
XI:3358380..3360850
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AA seq
595 aa
AA seq
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MTKRSSDSQHCSARDNSSPCCLLSNTARSTLSMRGEMAQKGVQLDQETFSCAICLDLLRD
PVTTPCGHSYCMKCIKMHWDGEDVKRIHSCPQCRQTFIPRPVLVKNTMLAALVEELKKTG
LQAAPADHCYAGPEDVACDVCTGRKLKALKSCLVCLASYCEKHLQPHHDVAPLKKHKLVE
PSKKLQENICSRHDEVMKMFCRTDQQCICYLCSVDEHKGHDTVSAAAERTERQRELEVSR
LNIQQRIQDREKDVKELQQEVEAINGSADKAVEDSEKIFTELIRLMEKRRSDVKQQVRSQ
QETEVSRVKDLQEKLEQEITELKRKDAELEKLSHTEDHNQFLHNYPSLSRLSQSTDSSSI
NIRPLRYFEDVTAAVSELRDKLQDVLRDQRTNISLTDTEVHVSLSRPEPEPKTRAEFLKY
SCELTLDPNTAHKQLLLSEGNRKLTRMNQHQSYSSHPDRFTWWAQVLSRESLTGRCYWEV
EWSGAGVGVAVTYKSISRAGRLLECSFGSNDKSWKLNCLLSSYNFYYNNVQTLVSGPQSS
KVGVYLDHNAGILSFYSVSETMTLLHRVQTTFTQPLYAGLHVFNYEDTVELCKLR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaacggagttcagattcacagcactgctcagcacgcgataactcctccccctgc
tgcctgctctcaaacacagcgagatccactctgtccatgagaggagagatggcgcagaaa
ggagttcagctggaccaggaaaccttctcctgtgcgatctgtctggatctactgagggat
ccggtgactactccctgtggacacagctactgcatgaagtgtattaaaatgcactgggat
ggagaggatgtgaagagaatccacagctgccctcagtgtaggcagaccttcataccgagg
cctgtcctggtgaaaaacaccatgttagcagctttagtggaggaactgaagaagactgga
ctccaagctgctcctgctgatcactgctatgctggacctgaagatgtggcctgtgatgtc
tgcactgggagaaaactgaaagctctgaagtcctgtctggtctgtctggcctcttactgt
gagaaacacctccagcctcatcatgatgtagctccattaaagaaacacaagctggtggag
ccctccaagaagctccaggagaacatctgctctcgtcatgatgaggtgatgaagatgttc
tgccgtactgatcagcagtgtatctgttatctctgctctgtggatgaacataaaggccac
gacacagtctcagctgcagcagaaaggactgagaggcagagagagctcgaggtgagtcga
ctaaacatccagcagagaatccaggacagagagaaagatgtgaaggagctccaacaggag
gtggaggctatcaatggctctgctgataaagcagtggaggacagtgagaagatcttcact
gagctgatccgtctcatggagaaaagaaggtctgatgtgaagcagcaggtcagatcccag
caggaaactgaagtgagtcgagtcaaagatcttcaggagaagctggagcaggagatcact
gagctgaagaggaaagacgctgagctggagaagctctcacacacagaggaccacaaccag
tttctacacaactacccctcactgtcacgactcagccaatctacagactcatccagcatc
aatatccgtcctctgaggtactttgaggatgtgacagctgctgtgtcagagctcagagat
aaactacaggacgttctgagggaccaacggacaaacatctcactgacagacactgaagtc
catgtttcactgtcaagaccagaaccagagcccaagaccagagctgagttcttgaaatat
tcatgtgaactcacactggatccaaacacagcacacaaacagctgttattatctgagggg
aacagaaaactgacaagaatgaatcaacatcagtcttattctagtcacccagacagattc
acttggtgggctcaggtcctgagtagagagagtctgactggacgttgttactgggaggtg
gagtggagtggggcaggagttggtgtagcagtcacatacaagagtatcagcagagcaggg
aggttacttgaatgttcatttggatcaaatgacaaatcttggaagttaaattgtctctta
agcagttataacttttattacaacaatgtccaaactctcgtctctggtcctcagtcctcc
aaagttggagtgtacctggatcacaatgcaggtattctgtccttctacagcgtctctgaa
accatgactctcctccacagagtccagaccacgttcactcagcctctctatgctggactt
catgtttttaattatgaagacactgttgagttgtgtaaactcagatag
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