Lucilia cuprina (Australian sheep blowfly): 111675262
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Entry
111675262 CDS
T06013
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03020
RNA polymerase
lcq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111675262
09124 Replication and repair
03420 Nucleotide excision repair
111675262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcq03021
]
111675262
03400 DNA repair and recombination proteins [BR:
lcq03400
]
111675262
Enzymes [BR:
lcq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111675262
Transcription machinery [BR:
lcq03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111675262
DNA repair and recombination proteins [BR:
lcq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111675262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
111675262
NCBI-ProteinID:
XP_023291767
EnsemblRapid:
LOC111675262
LinkDB
All DBs
Position
3:35735078..35742834
Genome browser
AA seq
1891 aa
AA seq
DB search
MATNDSKAPIRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVI
DRTSRCQTCAGNMTECPGHFGHIDLSKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPK
IKEIVMKTKGQPRKRLAYVYDLCKGKKICEGGEDMDMTKDGQPADPNKKPGHGGCGHYQP
SIRRTGLDLTAEWKHVNEDSQEKKMAITAERVWEILKHITDEECFIMGMDPKYARPDWMI
ITVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEGTGAAAHVIMENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFITREQVMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTV
KLSNKSFEKRFKFDWSNERYMRKVFTDEVIKELSESGNALPQLEVEWEQLCRDREALREI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDHL
SKQANENATLLFQCLVRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEENKF
QDEEEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDASAHAETD
PMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRYGIEIANTLGSSMLGGSGMFFGAVATPS
MSPPRTPWIQCGTPKYLSPSGQMSGMTPGGPSFSPSAASEASGMSPIWSPAHPGSSPSSP
GPAMSPFLSPSPNVSPPSYSPTSLNYTASSPGGASPSYSPLSPSYSPTSPVYASSSPRYS
STTPIFNPQSTGYLPSTSGYSPSSPVYSPTSNLQSSSPSYAGSGSNMYSPASAYSPTSSN
YSPNSPSYSPTSPSYSPSSPSYSPSSPCYSPTSPSYSPSSPTYTPVTPSYSPSSPNCSSS
PHYSPASPAYSQTGVKYSPTSPKYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL
YSPASPQHSPANQYSPTGSSYSATSPRYSPNMSIYSPSSTKYSPSSPPTYTPTRNYSPAS
PMYSPTAPSHGYSPTSPAYSPSSPTYEESDD
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggctactaatgattccaaagcgcctataaggcaagtaaaacgtgtgcaattcggtata
ttgtctccggatgaaattcgacgtatgtcagtcacagaaggcggtgtacagtttgccgaa
accatggaaggtggccgtcccaaattaggtggtcttatggatccccgtcaaggtgtcata
gatcgtacctcacgttgccaaacctgtgctggcaatatgacagaatgtcccggccatttc
ggccacattgacttgtctaaacctgtatttcatattggttttataacaaaaaccatcaag
attttaagatgtgtttgcttttattgttccaaaatgttggtatcacctcataatcctaaa
atcaaagaaattgttatgaaaacaaaaggacaaccgcgtaaacgtctggcttatgtttat
gatttgtgtaaaggtaaaaagatttgcgaaggtggtgaagatatggatatgacaaaagat
ggacaaccggctgatccgaataaaaaacctggtcatggtggttgcggtcattatcagcca
tcgattagaagaactggtttagatttgacagccgaatggaaacatgttaatgaagattca
caggagaaaaaaatggccataacagctgaacgagtttgggaaattctaaaacacattacc
gacgaagagtgcttcattatgggtatggatcccaaatatgcacgtcccgattggatgatt
atcactgtattacccgttccacccttggctgtacgtcctgccgttgtgatgtttggtgcc
gccaagaatcaggatgatttaacgcacaaactttccgatatcattaaggctaacaatgaa
ttacgtaaaaacgaaggcaccggtgctgcagctcatgttattatggaaaatataaaaatg
ttacaatttcatgtagccacacttgtagacaatgacatgcccggtatgccaagagctatg
caaaagtccggcaaacccctaaaagccattaaatcacgtctaaagggtaaagaaggtcgt
attcgtggtaatttgatgggaaaacgtgtagatttctcagcacgtactgtcattacaccc
gatcccaatttacgtattgatcaggtcggtgtaccacgatccattgcacagaatttaact
tttcccgaattggtaacaccttttaacatagatcgtatgcaggaattagtaagacgtggt
aattcacaatatcctggcgctaaatatattgtacgtgacaatggtgaacgtattgatttg
cgtttccatcccaaaccttctgatttacatttacaatgtggctataaagtagaacggcat
ttacgtgatgatgatttagttattttcaatcgtcagcccactttgcataaaatgagtatg
atgggtcatcgtgttaaggttttgccatggtcaacattccgtatgaacttgtcgtgtacc
tcaccgtataacgctgattttgacggtgatgaaatgaatttgcacgttccccaatcgatg
gagacgagagctgaggtggagaatattcacgttactccacgtcagattattacaccacag
gctaacaaacccgtcatgggtattgtgcaggatacactgacagccgtacgtaaaatgaca
aaacgtgatgtcttcattacacgcgaacaggtcatgaacttacttatgttcttgcccact
tgggatggtaaaatgccacaaccgtgtattttaaaacccaaacctctatggaccggtaaa
caaatcttcacccttatcattcctggcaacgtaaacatgatacgtactcactctacacat
ccggacgatgaagatgatggtccgtataaatggatttcacccggtgacacaaaagtcatg
gtagaacatggtgaattgattatgggtattctgtgtaagaaaaccctgggtacatcagct
ggttctctgttgcatattgtctttttggaattgggtcatgagattgctggacgtttttat
ggtaatattcagactgtcattaataattggttgctgttggagggtcacagtatcggtatt
ggtgatacaattgccgatcctcagacttataatgaaattcagatggccattaagaaagcc
aaagacgatgtcatcaacgttattcaaaaggctcacaacatggaattggaacctacaccc
ggtaatacattgcgtcagactttcgagaatcaagtaaatcgtattttgaacgatgctcgt
gacaaaactggtggttccgctaagaaatctcttactgaatacaacaatctaaaggctatg
gtggtgtctggctctaagggttccaacattaatatttcccaggttattgcttgtgtaggg
caacagaacgtcgaaggtaaacgtataccttatggttttcgcaagcgtactttgccacat
ttcattaaagacgattacggtcctgaatctagaggtttcgtcgaaaattcatatctagcc
ggtttgactccatccgaattctatttccacgctatgggtggtcgtgaaggtcttattgat
acagctgtaaaaactgctgaaactggttatatccagcgtcgtcttataaaggctatggaa
tctgtaatggttaattatgatggtactgtgcgtaattctgtgggtcaacttattcagttg
cgttacggtgaggacggtttggcaggtgaaacggtagagtttcagaatcttcctactgtt
aagttgtcgaataagtctttcgaaaaacgtttcaaattcgactggtccaatgagcgctac
atgcgcaaagtctttacagatgaggttattaaggagctgagtgaaagtggcaatgcttta
cctcaactagaggtggaatgggaacaattgtgtcgtgatcgtgaggctttaagagaaatt
ttccctaatggtgattccaaagttgtattgccttgcaatttacaaagaatgatttggaat
gtacaaaagattttccatatcaataaaagaatgcccacagatttgtctccgctacgtgtt
attaatggtgtgcgagatcttttgcaacgctgtgttattgtggtgggcaatgatcatttg
tccaaacaggccaatgaaaacgctactttattgttccagtgtttggtgcgttccactttg
tgtaccaaatatgtagcagaagaattccgtttgtccactgaagcttttgagtggttgatt
ggtgaaattgagactagatttcaacaggctcaagctaatcccggtgaaatggtgggtgcc
ttggctgcccagagtttgggtgagcctgccacacagatgacactgaacactttccatttt
gctggtgtatcctcaaagaacgtaaccctcggtgtaccacgtcttaaggaaattatcaat
atttccaagaaacctaaagctccctctctaacggtgttcttgacgggtggtgctgcccgt
gatgctgaaaaggctaagaatgttttatgtcgtttggaacatactactctacgtaaggtt
acagccaataccgctatctactatgatcctgatcctcaacgtactgttatagcagaggat
caagaattcgttaatgtttactatgaaatgcctgattttgatcccacacgcatttcaccc
tggttgctgcgtattgaactcgatcgcaagagaatgacagataagaaattaactatggaa
cagattgctgaaaagatcaacgccggttttggtgatgatcttaattgtattttcaatgat
gacaacgccgacaaattggtcttgcgtatacgtatcatgaacaatgaggaaaacaaattc
caagatgaagaggaagcagtagacaaaatggaagatgatatgttcttacgttgtatcgaa
gctaatatgttgtccgacatgacactgcagggcatagaagccattggcaaagtgtacatg
catttgccacaaacggacagtaagaaacgtattatcatcacagagacgggagaatttaag
gctatcggagaatggttgctggaaactgatggtacctctatgatgaaggtactctctgaa
cgtgatgttgatcccgtacgtacttcatccaatgatatttgtgaaattttccaagtactt
ggcattgaagctgtgcgtaagtccgtggaaaaggaaatgaacgctgtgctacagttttac
ggtttgtatgtaaactatcgtcatttggccttgttgtgtgacgtaatgacagccaagggt
catttgatggccatcacacgtcacggtatcaatagacaggatactggtgctcttatgaga
tgttcctttgaagaaactgtggatgtgttgttggatgcgtcggctcatgctgaaacagat
cctatgagaggtgtatccgagaatattattatgggtcaattgccgaaaatgggaacaggt
tgtttcgatttgttgctggacgctgagaagtgtcgttatggtattgaaattgccaatact
ttgggatctagtatgttgggcggttcgggtatgttctttggagctgttgccacacccagt
atgtcaccaccacgtacgccctggattcaatgtggtactcccaaatatttgtcgccttct
ggacaaatgagtggcatgactcccggaggacccagcttttcaccctccgcagcttcagaa
gcctcgggaatgtctcccatatggtcaccagcccatcctggttcatcaccctcctctccg
ggaccggctatgtcacccttcttatcgccctcacccaatgtatcaccaccatcgtactcg
cccacaagtctcaactatacagcatcatcacccggcggagcatcacccagttactcacca
ctcagtccgagctattcgcctaccagtccagtttatgcctccagttcgcccagatactct
tcgactacacccattttcaatccacaatcaaccggttatctaccctcaaccagtggttac
tcaccatcatcaccggtctattctccaacatcgaatttacaatcgtccagtccttcatat
gctggcagtggttcgaatatgtattcaccagcgagtgcttattctccgacttcttcaaat
tattcaccaaattctccttcgtattcgccaacttctccctcgtattcgccttcaagtcct
tcgtattctccttcatcgccctgctactcacccacatcaccctcttattcaccctcatcg
cctacttatacaccagtaacgccttcatattcaccctcttcacccaactgttcgtcttct
ccacactattcaccagcctcgccggcttattcccaaacaggggtgaaatattcaccaaca
tcaccgaaatattcaccaccttctccttcgtacgatggttcaccgggttcaccgcaatat
acacccggctcaccacaatattcaccagcttcacccaaatattctcctacttctcctttg
tattcaccggcttcaccgcaacattcgccagccaatcaatacagtccaacaggttccagt
tattcggccacttctccccgttactcgcccaacatgtccatttattcgccgagcagcaca
aaatattcgccctcgtctcctcctacctacacaccaacacgtaattactctccagcttca
cccatgtactcgcccacagctccttctcacggttattcaccaactagtccggcctactcg
cccagtagtcctacctatgaggaaagtgatgattaa
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integrated database retrieval system