Leptinotarsa decemlineata (Colorado potato beetle): 111503207
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Entry
111503207 CDS
T07512
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Pathway
ldc03013
Nucleocytoplasmic transport
ldc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111503207
03015 mRNA surveillance pathway
111503207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldc03019
]
111503207
Enzymes [BR:
ldc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111503207
5.6.2.5 RNA 5'-3' helicase
111503207
Messenger RNA biogenesis [BR:
ldc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111503207
mRNA cycle factors
Common to processing body (P body) and stress granule
111503207
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
ATPase
SLFN-g3_helicase
Helicase_RecD
UvrD-helicase
SRP54
AAA_16
nSTAND3
AAA_22
AAA_7
AAA_10
AAA_5
Motif
Other DBs
NCBI-GeneID:
111503207
NCBI-ProteinID:
XP_023013225
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEDAELIGADTQGSECEFTDFTIPSQTQASQHDHAGPKVAGVQ
LNNNIVAKISTVTATLGDLQFEEDDEEGFFNGKELPDYACKYCGIHDPHCVVLCNLCKKW
FCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPAKADS
VVVLLCRQPCAAQNSLKDMNWDQDQWKPLIADRCFLTWLVKIPSEQEQLRARQISAQQIN
KLEELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKES
QTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKTWAGVGHVIKV
PDNYGEDIGIELKNGSGAPSECSSNFVVDFIWKSTSFDRMQLALRKFAVDDTSVSAYIYH
RLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSA
TIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTNLKVVRLCAKSREAIDSPVSFLALHN
QIRKMEGNTELQKLQQLKDETGELSSVDEKRYRMLKKMAEKELLEAADVICCTCVGAGDP
RLVRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQS
LFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVSAEERKLNKIDFPWPIAE
RPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLKSGVKPEQIGVITPYEGQRAYL
VQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVAL
TRSKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLCEGPLTNLKESLIQFAKPKKLINAE
NPGSHFMTTSMFDAREAMVPGSVYDRTNQPMNGQFNYPTTRGMPLDMFSRTHDPISYISP
ERAQAGMNLPVPVGMFMNMAHIPPRFYNQHQQALQARQQQNPRNRKPPQRQKGKGLSQDH
TQPFSQSLQLTQGMSQPGLSQPGFSLSQPGLSQAELSQDPYMAEYQSQMDGLLSQDSTYQ
GDRSAFYQPSSAQFSQPY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcgtatggaccaagttcgcaaactctcacgtttttggacacggaggat
gctgagttgatcggagcagatactcaaggatctgaatgcgaattcacagatttcactatt
ccttcgcaaacgcaggcctctcagcatgatcacgccggccccaaagttgcgggggtacag
ctaaataacaacattgttgcaaaaatctccactgtaacagctacactgggtgatctgcaa
tttgaagaagacgatgaggaaggctttttcaatggcaaagagttgccagattacgcatgt
aaatattgtggcatacacgacccacattgtgtagttttgtgcaatttatgcaaaaaatgg
ttctgcaatggcaggggaaacacatcaggaagccatataattaatcatctcgtgagggca
aaacataaggaagttaccttacacaaagatgggccattgggagagacaattttagaatgc
tacagctgtggagtgcgaaatgtatttgttctgggtttcattccagcaaaagcggattcc
gttgttgttttgctttgcagacaaccatgtgcagcacagaattccctcaaggatatgaac
tgggatcaagaccaatggaaacctttaatagcagatcgttgtttcttaacgtggttggta
aaaataccttcggaacaagaacagttacgggccagacagatttcagctcagcagatcaat
aaacttgaggaactttggaaagaaaacgttgatgcgacttttcaagatcttgaaaaaccc
ggagtggacgaagaacctcagcaggtccttctccggtacgaagacggctaccagtaccaa
aatatctttggtcccctagtaaagttagaagcggactatgacaagcgtctgaaggaatct
caaactcaagaaaatattgaagtacgctgggatgtgggtctcaataaaaagaccatagct
tatttcaccttggccaaaacggatggagacatgaagttgatgcacggagacgaactgagg
ctgagatatgttggagagatgcacaagacttgggcaggcgttggacacgtaataaaggtc
cctgacaattatggagaagacatcggtatagagttgaagaatggttctggggcccccagc
gaatgcagcagtaactttgttgtggatttcatctggaaaagtaccagttttgacagaatg
cagttggctcttagaaaatttgctgtagacgatacttcagtttctgcctacatctaccat
cgcctgctgggtcacgaagtggaagaagttcttttccgctgccacctaccgaaacacttt
tcagcaccaaacctgcccgacctcaatcgttcgcaagtctatgcagtgaaacacgctctc
cagcgccctctgtctttgatccaaggaccgccaggtactggcaaaactgtaacgtccgcc
accatcgtctatcagcttgtgaaacagaatggcggcccagttttagtgtgtgcccccagt
aatacagctgtcgatcagttgaccgagaaaatacacaagactaacctcaaagtagtgaga
ctttgcgccaagtcgagggaagctatcgattcacctgtcagtttcctagcgctgcacaat
cagatcagaaagatggaagggaacacagagttgcaaaagttgcaacaactcaaagatgag
acgggcgagttgagttccgtcgatgagaaaaggtacaggatgctgaagaaaatggctgaa
aaagaattgttggaagctgctgatgtcatttgttgcacttgtgttggagctggggatccc
aggctagttagattgaaattccattcaatattgatcgacgagagtatgcaagccacagaa
ccggagtgcatggttccagtcgtgttgggcgttaaacaactaatcttagtcggtgaccat
tgtcagttgggtcccgttgtgatgtgcaagaaagcagcccgagcaggtctctcacaaagt
ttattcgaacgtctggttgttctcggtataagacctttccgcctcgaagtgcagtaccga
atgcacccagaactttcacgtttcccatcgaatttcttctacgagggcagtttgcagaat
ggtgttagcgcagaagagagaaaactgaacaaaattgatttcccttggccaatagctgag
agaccgatgtttttcctcgttactcagggtcaggaagaaattgcaggatctggaaccagt
tacttgaatagaacagaggcttccaatgttgaaaaaattgctacgaggtttctgaaatct
ggcgtgaaacctgagcaaatcggtgtgattactccttatgagggtcaaagggcctacctc
gttcagtacatgcagtaccagggttccctacatagcaaattataccaggaaattgaaatt
gctagcgtcgatgctttccaaggtagagagaaagacattataataatgtcttgcgtccgt
tctaatgagcaccaagggataggttttctcaatgatcccagacggttaaatgttgctttg
actagatccaaatatggaataatcattgtaggtaatccgaaggtattgtccaaacaaccg
ctatggaatcacctcctgtctttctacaaggagcaaaaagtattgtgcgaaggacctctg
acgaacctcaaggaatccctcatccaattcgccaagccgaaaaagctgatcaatgccgaa
aacccaggttcccacttcatgactacttctatgtttgacgctcgagaagccatggtacca
ggctccgtctacgatcgtaccaaccaaccgatgaacggacaattcaactaccccaccacc
cgcggcatgcccttggatatgttcagtcgcacccacgatccgattagttacatctctccc
gaacgtgctcaggcaggcatgaacttgcccgtaccggttgggatgttcatgaacatggcc
cacataccgccgaggttctacaatcaacaccagcaggcactgcaagcacgccagcagcag
aacccgcggaacaggaagcctccacagaggcagaagggcaaagggttgagccaagaccac
acccagccgttcagtcagagtcttcagttgacgcagggaatgtctcaacctggtttgtcg
cagcccggtttcagtctgagccaaccgggtctatcgcaagcagaactcagtcaggatccc
tacatggcagaataccagtcacagatggatggtttgttgtcccaagattcaacataccag
ggagataggtctgcattttaccagcctagcagcgcccagttctcccagccctattga
DBGET
integrated database retrieval system
