Leucobacter denitrificans: H9L06_11255
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Entry
H9L06_11255 CDS
T06817
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ldn
Leucobacter denitrificans
Pathway
ldn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ldn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9L06_11255 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ldn03400
]
H9L06_11255 (mfd)
Enzymes [BR:
ldn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L06_11255 (mfd)
DNA repair and recombination proteins [BR:
ldn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9L06_11255 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QNN62774
UniProt:
A0A7G9S4J9
LinkDB
All DBs
Position
2327373..2331062
Genome browser
AA seq
1229 aa
AA seq
DB search
MSLSGLEHLLEQAPSFARALDAAAEDAEFSVADGLRAPLIAGLIRKRRAAGDRGATLIIA
ATSREADAIRQSIASILPDAITTEFPAWETLPHERLSPSAETVGRRAQALRALRDYGADE
AVAKEHPFVMVASVRAALQPVSPHAAHATPVILQTGKNVVLDSGELGLEALSRTLVEFAY
TRVDMVTRRGEFAVRGGILDVFPPTAEQAVRVDFFGDEVDLIKRFAVSDQRSAGDPLDSL
ELWPARELLLTAEVREKAAELLPRFPALSSMLERMSAGIAVEGMESLLPQLVPGLSPLTE
LLTDGGAVLVVSPERVAGRAVSLAETNREFREAAWYAATAGADSPVPTDNSGMLTMNELR
RAAVGRPWWSVTGFVRDAEDDEAAGIDDLGDSTITVLGGAARRAQSGAEPTTQAIQHLSQ
RLSEGWHAIVAAQGVGLVERARDLLAEAGAAARMVDELPTELETGVIYLVTGTAWQGFES
EEAKLLLETEVEFFGRAVTSQVASGQKLARRRGKNVVDPLKLVAGDYVVHETHGIGRFVE
LTQRMVPTGAGLRAEKALREYLVLEYASTKRGMPRDKLYVPTDQLDQLSRYVGGEAPALS
KMGGSDWEGAKKKARKAVRDIAVELVKLYSERMASPGHAFTEDTPWQRELEEAFPYAETL
DQLTTIDEVKRDMERPVPMDRLLAGDVGFGKTEVAIRAAFKAVQDGKQVAMLVPTTLLVN
QHIETFQNRFAGFPVQLRPLSRFQTEKESKETIEGLAAGTVDVVIGTHRLLSESVIYKDL
GLLIIDEEQRFGVEHKDALKKLKAGVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDR
HPILTFVGPRSDKQMTAAIRRELLREGQVFFVHNRVSSIQRIASHISELVPEARVAVAHG
RLSESQLEKVVQDFWERKYDVLVSTTIIETGLDIANANTIIIDQADKYGLSQLHQLRGRV
GRSRERAYAYFLYDPEKPLTEHANERLETLAANNELGAGMQVALKDLELRGAGNLLGGEQ
SGHIAGVGFDLYLRMIGEAVNTFKGVESAVNTELILELPVDARIPEEYVESERLRLEAYQ
KFSAASHPQAPEENVSLVLEELTDRYGKPPEEVERLAAVSSLRRRAAKLGLSKLIAAGPM
LRIEPVQLLDSRRMRMNRMYPGAKYQESTKVLQVPLPGGTVTARSPLAGVGQRSTAEDGD
VVAWATKVVANLLEPEAPPAAAGEVPQNG
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcagcgggctggagcacctgctcgagcaggctccgtcgtttgcgcgcgcactt
gacgcagctgctgaggatgcggaattctccgttgcggatggcctgcgtgccccgctcatc
gctggcctcatacgcaagcgccgagcagcgggtgatcgaggcgcaacactcatcatcgcg
gcgacgagtcgcgaagctgatgcgatccgccaatcaatcgcatcgattttgcccgacgca
atcacgacagaattcccggcatgggaaacgctgccgcacgaacgcctgagcccgagcgcc
gaaacagtgggtcgtcgcgcgcaggcgctgcgagcgcttcgcgactacggagcagacgaa
gctgtagccaaggagcacccgtttgtgatggtcgcgtcggtgcgagcggcattgcagccg
gtgtcaccgcacgcggcgcatgccactcccgtgatcttgcaaactggcaagaatgtcgtg
ctcgactcgggtgagctcgggctcgaagcgctgtcgcgcacactcgtcgaattcgcgtac
acccgagttgacatggtgactcgacgcggcgagttcgccgttcgcggcggcattcttgac
gtgtttcctccgaccgcagagcaggccgtgcgcgttgatttctttggcgatgaggtagat
ctcatcaagcggttcgcggtatcagaccagcgaagcgcgggagatccactcgactcactc
gagctgtggcccgcgcgagagcttctgctcacagcagaggtgcgggagaaggctgcggag
ctgctgccgaggttccccgcgttgtcgagcatgcttgaacgcatgagtgccggcattgca
gtcgaggggatggagagtctgcttccgcagctcgtgccgggcctttctccgctgacggaa
ctgttgaccgacgggggagcagtgctcgtcgtctcgcccgagcgtgtggcggggcgagct
gtgagcctcgccgaaaccaaccgtgagttccgcgaagctgcctggtacgcggcgaccgcg
ggcgcagattcgccagttcccacagataacagcggaatgctcacgatgaatgagctgcgt
cgcgcggcggtgggtaggccctggtggagcgtcaccgggttcgtgcgtgacgcggaggac
gacgaggcagcgggcatcgatgacctcggcgattcgacgatcacagttctcggtggtgct
gctcggcgcgcccagagtggtgcagagccgacgacccaggcgatccagcatctgagtcag
cggctgagcgagggctggcacgcaatcgtcgcggcgcagggagtcgggcttgttgaacgc
gcccgtgatctgctggccgaagcgggtgccgcagctcgcatggtcgacgaactgccgact
gaacttgagaccggggtgatttacctcgtcaccggaaccgcgtggcagggcttcgaaagc
gaagaggcaaagctgctgcttgagaccgaggtcgagttcttcgggcgtgcggtcacttcc
caggtcgcgagcgggcagaagctcgcaaggcggcgtggcaagaatgttgtggatccgctg
aagctcgtcgctggtgactacgtggtgcacgagacgcacggaatcggaaggtttgtcgag
ctcactcagcgcatggtgccgaccggcgctggactgcgtgcagagaaggcgctgcgcgag
tacctggtgctcgaatacgcgtcaacgaagcgcggcatgccgcgcgacaagctctatgta
ccgactgatcagcttgatcagctctcacgatatgtgggcggtgaggcgcccgcgctatcg
aagatgggtggtagcgactgggaaggtgcgaagaagaaagcgcgcaaggccgtgcgcgat
atcgcggtcgaactggtgaagctctattccgagcgcatggcttctcctgggcacgcgttc
accgaggatacgccgtggcagcgagagctcgaagaggctttcccatacgcggagacgctc
gatcagctcaccacgatcgacgaggtgaagcgcgacatggagcgacccgtaccgatggat
cggctgctcgcgggcgacgtcggcttcggtaagacggaggttgcgatccgtgcagcgttt
aaggcggtgcaagacggaaaacaggtcgcgatgctcgtaccgactaccttgctcgtgaac
cagcacattgagacattccagaacaggtttgctgggttcccggtgcagttgcgcccgctg
agccggttccaaactgagaaggagtcgaaagagacgatcgaggggctcgccgcgggtacg
gtcgatgtcgtcatcggcacccatcgactgctctccgaaagcgtgatctacaaggatctc
ggattgctgatcattgacgaggagcagcggttcggcgtcgagcacaaagacgcactcaag
aaactcaaggcaggcgtcgacatccttgcgatgagcgcgacgccgatcccacgaacactc
gaaatggcggtcaccggcattcgtgagatgtcgacgctcgcgacaccgcccgaagatcgg
cacccaattctcacgtttgtcggcccacgcagcgataagcagatgaccgccgcgatccgc
cgcgaattactgcgcgaggggcaggtgttcttcgtacacaatcgcgtgagttcgattcag
cggatcgcgtcgcacatttctgaactcgttcccgaggcgcgcgtcgcggttgcacacggc
cggctgtctgaatcgcagcttgaaaaggtggtgcaggacttctgggagcggaagtacgac
gtgctcgtctcgacaacgatcattgagacgggtctcgatattgcgaacgcgaacaccatc
attattgaccaggccgataagtacggtctgagtcagttgcaccagcttcgcggccgcgtc
gggcgcagtcgcgagcgcgcgtatgcgtacttcttgtatgaccccgaaaagccgctcact
gaacacgcgaacgagcgcctcgaaacgctcgccgcaaataacgagctcggtgcaggtatg
caggtcgcgctcaaggatctcgagttgcgtggagccggcaatttgcttggtggcgagcag
tcggggcatattgctggtgtcggctttgacctgtacctgcgcatgatcggtgaggcagtg
aacacgtttaagggtgtcgagtcggcagttaatacagaactgattcttgagctgccggtc
gacgcgcgtattcctgaggaatacgtcgaaagcgagcggctgcgccttgaggcgtatcag
aagttctcggccgcctcgcatccgcaggcaccggaggagaacgtatcgctcgtgctcgag
gagctcaccgatcgctacggcaagccgccggaggaagttgagcgactcgcggcggtctcg
tcgctcaggcgcagagccgcgaagctcggcctctcgaagctcattgctgcagggccaatg
ttgcggatcgagccggtgcaactgctcgattcacggcgcatgcgcatgaaccgcatgtac
ccgggcgcgaagtaccaggaatcgacgaaggtgctgcaggtgccgctacccggcggcaca
gtgaccgcccggagtccgctcgcgggtgtcggccagcgatccactgcggaagacggagac
gttgtcgcgtgggccacgaaggttgtcgcgaacctgctcgaacccgaggctccgcccgcg
gcggctggagaagtgccgcaaaacggataa
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integrated database retrieval system
