Leishmania donovani: LDBPK_060260
Help
Entry
LDBPK_060260 CDS
T02289
Name
(RefSeq) 5'-3' exonuclease, putative
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ldo
Leishmania donovani
Pathway
ldo03008
Ribosome biogenesis in eukaryotes
ldo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LDBPK_060260
09123 Folding, sorting and degradation
03018 RNA degradation
LDBPK_060260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldo03019
]
LDBPK_060260
03009 Ribosome biogenesis [BR:
ldo03009
]
LDBPK_060260
03016 Transfer RNA biogenesis [BR:
ldo03016
]
LDBPK_060260
03036 Chromosome and associated proteins [BR:
ldo03036
]
LDBPK_060260
Messenger RNA biogenesis [BR:
ldo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
LDBPK_060260
mRNA degradation factors
5'-3' decay
5' exonucleases
LDBPK_060260
Ribosome biogenesis [BR:
ldo03009
]
Eukaryotic type
Pre-60S particles
RNases
LDBPK_060260
Transfer RNA biogenesis [BR:
ldo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LDBPK_060260
Chromosome and associated proteins [BR:
ldo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
LDBPK_060260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
SH3_12
XRN1_D2_D3
Motif
Other DBs
NCBI-GeneID:
13391719
NCBI-ProteinID:
XP_003858334
UniProt:
E9B8N7
LinkDB
All DBs
Position
6:complement(84299..88798)
Genome browser
AA seq
1499 aa
AA seq
DB search
MGVPKFFRWAAERFPSIITPFKDSPPPVDNLYLDINGIIHNCTHPNDVDATRRSPTEKEM
IQAMFVYLEKLFNAIQPRKYFLLAVDGVAPRAKMNQQRQRRYRAGYEMMIAREEALAMGE
EVPEEKDVFDSNCITPGTPFMVRVSKEFQYFITMKLSTDPAWQGCQIIFSGHDCPGEGEH
KIVDFIRRRKMQPNYDPNETHCMYGLDADLVMLALATHEPHFVLLREVVTFGPGSRKERE
RQEEDEAKGLVKDKAYHKADEFVLLHINVFRDYLQLEVKGYLAKAKSSVSIDFERVIDDF
VFMCFFIGNDFLPTLPTIGINDGSIPALLHIYVDNMLSKSKYLTHKGEIDWRNAEVWLNE
VGKLEFETLRRRQQEEAEFQKNRARRDPTHEVDTASVIPITSILEFKQRYYGEKHGFAGG
WDANSEDMQRLREHYVEGLMWVMHYYYQGVPSWKWFFPHYYAPMASDMVNLPAIAARVSF
ELGKPFQPHQQLLAVLPPMSYLSMPKAYWPLLRSPSSPLAKYLPEHIVIDREGARAPWEG
IVLIPFIDERTLLAAYESVQKNVSPEDAANNVNGPPLRFCYDGKMPPYDLEDEMFGSLRN
VLVRRETYAFPHIDKFIPQLCPGVHVGTRQLEGFSTLQSKRDLIQPVFEAGVVSIFGRPT
KNDSLILQMRDFFKAKSVDQVATLVGKEVLVGFPHYKRARIASLKDVHKSITASYSKEGT
FSGTEEHKNNREESTAFVKEADTHARFMKSQLGLAVEQVEVLVYVHRFNGMQVTRKGHIE
RHFATTWTCYPIQLICTLDNIDMQEDSRYVERDRSEGDSAFGARCVYIGPQPKSKKSQMD
VYGSCGTVVTAGQHDTTTQQGDQMTVRLKVFQEPLRLPAELLQFAAQRNWTALPQVAISL
DILPHTLTSICSSIVTSPQFGSRELGLCLKFTGRCIAKVGYAKLVQHSLNPWYVGNKDIF
ARMEKDTEDIGYHLEMGEKGDFTGNSSSNRGGSGTWYFSRDAQELIRDYVKRFRPLIQYI
EAGGVNSNSVEPQRFLTGKWRDRDVDDVLTEIETFLIESGLRETPMITATEEAFPQQLLE
QLEASLQEQQNRSFKELSLRQVSRNQLYFPVTRSSCGHLVPLPLPQEQTFYLGSRVANCR
ATGIVPFGTQGTIVRLLASGREAEVVYDTPFTGGTRLDGRLKDTRAAITKLSALLVLKST
DAPQPQLQPQTQPDMRAAAAATTNGSAKLRELEFLLQANGIHVDPSGKSTVSPPSLPAAF
QSPTSAAARAAPADSGASHSSTAGAGASVVPRPRSAAATEQTPAPATLGKRATPASATAH
LSSTSSVTPITRETHSSPASLKITAAPGSSGISLQDLAKHLPASTSQRSPATVASPAGHA
PASGAVAATTAAALSGITIPAPKSAQQHQHPMQPASPPATTAVASPSQSNESNETSPGSN
TRRKSRDLHVIPDDFVSGRFKIKYTNTGSLFRSWLDTFTAEAVRKTLAELEAEGNANPL
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcccaagttcttccgctgggcggcggagcgcttcccctccatcatcaccccc
ttcaaggactcgccaccgccggtggacaacctctacctcgatatcaatggtatcatccac
aactgcacgcacccgaacgatgtcgacgcgacgcggcgcagtccgacagagaaggagatg
attcaggcgatgttcgtctatctggagaaactcttcaacgctatccagccgcgcaagtac
ttcctgcttgccgtcgatggtgtcgcgccgcgcgcgaaaatgaatcagcagcgccagcgc
cgctaccgcgccggttacgagatgatgatcgcgcgtgaggaggcgctcgcgatgggcgag
gaggtgccggaggaaaaggacgtgttcgacagcaactgcatcacccccggcaccccgttc
atggtgcgcgtgagcaaggagtttcagtacttcatcaccatgaagctgtccaccgatccg
gcgtggcaggggtgccagatcatcttctccggccacgattgccccggcgagggtgagcac
aagatcgtcgattttattcgccggcgcaagatgcagccgaactacgaccccaacgagacc
cactgcatgtacggcctcgacgccgatctcgtcatgctggcgctcgccacgcacgagccg
cactttgtgctgctgcgcgaggtggtcacgttcggccccggctctcgcaaggagcgggag
cggcaggaggaggatgaggcgaagggcctcgtgaaggacaaggcgtaccacaaggcggac
gagttcgtgctgctgcacatcaacgtcttccgcgactacctgcagctggaggtgaagggc
tacctggcgaaggcgaagagcagcgtgagtatcgactttgagcgagtgatcgacgacttc
gtcttcatgtgcttctttatcggcaacgactttctgccgacgctgccgaccatcggcatt
aacgatggcagcataccggcgctcctgcacatctacgtggacaacatgctcagcaagagc
aagtacctgacgcacaaaggcgagatcgactggcgcaacgccgaggtgtggttgaacgag
gtcggcaagctcgagttcgagacgctgcgccgacgtcagcaggaggaggcagagttccag
aagaaccgcgctcgccgcgaccctacccacgaggtggacaccgcctccgtaatacctatc
acgtcgatcctggagttcaaacagcgctactacggcgagaagcacggctttgctggcggc
tgggacgcgaacagcgaagacatgcaacgactgcgggagcactacgtggaggggctcatg
tgggtcatgcattactactatcaaggcgtgccttcatggaagtggttctttccgcactac
tacgcacccatggcgagcgacatggtgaacctccccgctatcgctgcccgcgtctcgttc
gaactcggcaagcccttccagccgcaccagcagctgctggccgtgctgccgcccatgtca
tacctgtccatgccgaaggcctactggcccctgctgcgcagcccaagtagcccgctcgcc
aagtacttgcccgagcacatcgttattgaccgcgagggcgcgcgcgcgccgtgggagggc
attgtgctgatccccttcatcgacgagcgcacgctgctcgccgcctacgagtcggtgcag
aagaacgtcagccccgaggacgccgcgaacaacgtgaatggccccccgctgcggttctgc
tacgacggcaagatgccgccgtacgacctggaggatgagatgttcggctctctccggaat
gtcctcgtgaggcgcgagacatacgcgttccctcacatcgacaagttcattccgcagctg
tgccctggcgtgcacgttggcacgcggcagctggagggcttcagcaccctccagtcgaag
cgcgacctaatccagccggtcttcgaggctggggtcgtgtcgatctttggccgtcccacc
aagaacgacagtctcatcctgcagatgcgcgacttcttcaaggccaagtcagtcgaccag
gtggcgactctcgtcggcaaggaggtgctcgtcggcttcccgcactacaagcgtgcccgc
attgcctccctcaaggatgtgcacaagtccatcactgcttcgtacagcaaggagggcacc
ttcagcggcaccgaggagcacaagaacaaccgcgaagagtcgactgccttcgtgaaggag
gcggacacgcacgcgcgcttcatgaagtcgcagctgggcctcgccgtggagcaggtcgaa
gttctcgtgtacgtgcaccgcttcaacggaatgcaggtgacgcgcaaggggcacattgaa
cgacacttcgccaccacctggacgtgctacccaatccagctgatctgcaccttggataac
atagacatgcaggaggacagccgttacgtcgagcgcgaccgcagcgaaggtgacagcgcc
tttggtgcccgctgcgtctacatcggtcctcagcccaagtcgaagaagtcgcagatggac
gtgtacggcagctgtggcacggttgtgacggctggccagcacgacacgacgacgcagcag
ggcgatcagatgacggttcgcctcaaggtgtttcaggagccgctgcggctgccggcggag
ctgctgcagtttgccgcacagcgcaactggacggcgctgccgcaggtggcgatcagtctc
gacattttaccgcacaccttgactagcatctgtagctccatcgtcacgtcgccgcagttt
ggctctcgcgagctggggctgtgtctaaagttcactgggcggtgcatcgccaaggtcggg
tacgcgaagctggtccagcacagtctgaacccgtggtacgttgggaacaaggacatcttt
gcccgcatggaaaaggatacggaggacattggctaccacttggagatgggcgagaagggc
gacttcacgggcaattcgagcagcaaccgtggtggcagcggcacgtggtacttctcccgc
gacgcgcaggagctgatccgtgactacgtgaagcggttccgcccactcatccagtacatc
gaggcgggcggcgtaaactcgaacagcgttgagccgcagcggttcctgacgggcaagtgg
cgcgacagggatgtcgacgacgtgctaacggagatcgagacattcttaatcgagtcgggg
ctgcgcgaaacgccgatgatcacggccacggaggaggcgtttccgcagcagctgctcgag
cagctcgaggcgtcgctgcaggagcagcagaaccgcagcttcaaggagctctcgttgcgg
caggtaagccgcaatcagctctactttcctgtcacgcgcagcagctgcggccatctcgtg
ccgctaccactgccgcaggagcagactttctacctgggctcgcgggtcgcgaactgccgc
gctacgggcattgttcccttcggcacgcaaggcacgatcgtgcgcttgctggccagcggc
agggaagcagaggtcgtctacgatacccccttcacgggaggcacgcgactcgatggccgc
ctcaaggacactcgcgccgccatcacgaagctgtcggcgctgcttgtactcaagtcgacg
gatgcgccgcagccacagctgcaacctcagacgcagccggacatgagggccgctgcggcc
gccaccacgaacgggtcggccaagctgcgggagctggaattcctcctgcaggcgaacggc
attcacgtggacccctcgggcaagtccacggtgtcgccgccatcgctgcctgcagcgttt
cagagccccacaagtgccgcggctcgcgctgcgccggccgactctggtgcgagccatagc
agcaccgcaggcgccggtgcaagcgttgtgccgcggccgcgcagtgccgctgcgacggag
cagacgccggcaccagcgacactaggcaagcgcgccacccctgcctccgccaccgcccac
ttgtcctcaacgtcttcggtgacgccaatcaccagagagacccacagcagtcccgcgagc
ctcaaaatcacggctgccccagggagcagcgggatcagccttcaagacttggccaaacac
ttgccggcctccacatcccagcgctcgcccgccactgtcgcctcgccggctggccacgct
ccagcgtcgggtgcagttgcggcaacaacggcggcggcgctcagcggcatcaccatcccg
gcccccaagtctgcgcagcagcaccaacacccgatgcagcccgcttcgccgccggcgacg
acagctgtggcctcgccaagccaaagcaatgagtcgaacgagacttcccccggctcaaac
acgcgccgcaagtcgcgcgacctgcacgtcatcccagacgacttcgtcagtggacggttc
aagatcaagtacacgaacacgggctcgctgttccgcagctggctggacaccttcacggcg
gaggcggtgcgcaagaccctcgccgagctggaggcggaggggaatgcgaatcccctgtga
DBGET
integrated database retrieval system
