Leucobacter coleopterorum: G7066_10445
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Entry
G7066_10445 CDS
T06501
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
leb
Leucobacter coleopterorum
Pathway
leb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7066_10445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leb03400
]
G7066_10445 (mfd)
Enzymes [BR:
leb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7066_10445 (mfd)
DNA repair and recombination proteins [BR:
leb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7066_10445 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QIM18902
LinkDB
All DBs
Position
complement(2211785..2215426)
Genome browser
AA seq
1213 aa
AA seq
DB search
MTLRGVDRLLETSESFSRALDASERDAEFAVTDGLRAPLIAGLVRRRREGGDRGPLLVIA
ATSREADSLRSALASLIPEATTVEFPAWETLPHERLSPSAETVGRRAAALRVLRESVDHA
EEGPLILVASVRAALQPVSPHAVEARSIVLRAGEASDPLETVARDLVELAYTRVDMVTRR
GEFAVRGGILDVFPPTEDHAARVDFFGDEVDQIRRFAVADQRSAGDPLTELELWPARELL
LTPEVRERAAEMLPRYPALSTLLEKMSQGMPVEGMESLLPQLVPGLEPLTSLLPEGGAVL
VASPERVASRAVSLSETNREFLEAAWSAATAGADAPIPVDDSGMLSMSQLRKASNGRPWW
SVSSFVRDEGESADTEEHVNYVDFVTINVNGGPVLKPSSVEATGATISLLSERLAAGWHA
IVTARGIGLVERARDVLSEAGAAARLVAELPEVLEDGVVYLVPGTASSGFESDEAKLLLV
SEAEFFGRAVSSQAATGQKLAKRRGKNVVDPLKLVAGDYVVHETHGIGRFVELTQRMVPT
GIGRDATKALREYLVLEYASTKRGMPKDKLYVPTDQLDQLSRYVGGEAPALSKMGGNDWA
NAKKKARKAVRDIAVELVKLYSARVASKGFAFSSDTPWQHELEEAFPFAETLDQLTTIDE
VKRDMEKPIPMDRLVAGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTLLVNQHLETFQD
RFAGFPVQLRPLSRFQTDKESKETIEGLAAGTVDVVIGTHRLLSENVLYKDLGLVIIDEE
QRFGVEHKDKLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATAPEDRHPILTFVG
PRSDKQIGAAIRREMLREGQVFFVHNRVSSISRVAAQIAELVPEARVAVAHGKLSEHQLE
QVVQDFWERKYDVLVSTTIIETGLDIANANTIIIDAADKYGLSQLHQLRGRVGRSRERAY
AYFLYDPDKPLTEHAHERLETLATNNELGAGMQVALKDLELRGAGNLLGGEQSGHIAGVG
FDLYLRMIGEAVSTFKGEDVQSNTELVLELPVDAHIPEEYVESERLRLEAYQKFSAASHP
QAPEDHVALVLEELTDRYGEPPEEVQRLAAVSALRRRASRLGLTKVVAAGPALRLEPVKL
LDSRKMRMNRMYPGSRYTEASQSLQIPLPGGTASSRSPLAGVGQRHVGDEGDVAAWTGRV
LATLLEEDAPAVT
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgacactgcggggtgtagatcgacttcttgaaacctccgagtcctttagccgagcgctc
gacgctagtgagcgtgacgcagaatttgccgtcacagacgggcttcgcgcaccgctcatt
gcgggccttgtgcgcaggcgcagagaaggtggggatcgtgggccactcctcgtgatcgct
gcgaccagtcgtgaggccgattcgttgcgcagcgcgttggcttcgctcatacccgaggca
accacagttgagttccctgcctgggaaacccttccgcacgagcggctcagccccagcgcc
gagactgtagggcgccgcgccgcagccctgcgggttctgcgcgagtcggttgaccacgca
gaagaggggccgcttatcctggtcgcctcagtgcgcgccgcgctgcagccggtgtcgccc
cacgcggttgaagcccgctccattgtgttgcgagccggtgaagcctccgatccgctcgaa
actgttgcgcgtgatctggttgagctcgcttacacccgagttgacatggtgacacgtcgc
ggcgaatttgcggtgcgcggtggcattctcgacgtcttcccgccgactgaagatcatgcc
gctcgtgtcgacttcttcggcgacgaagtggaccagattcgacgctttgcggtcgctgac
cagcgcagtgcaggggatccgctcaccgaacttgaactgtggcctgctcgggagttgctg
ttgactcctgaagtgcgcgagcgtgccgctgagatgttgcctcgctacccggcgctgagc
acactgcttgaaaagatgagccagggaatgcccgttgaaggcatggagagtttgctgccg
cagctcgtgccagggcttgaaccacttacgtcgctgcttcccgagggtggtgccgtgttg
gtggcatcacccgagcgggttgctagccgagccgtcagcctgtcagaaacaaaccgcgag
tttctggaggctgcctggagcgcagcgacggctggcgcggatgcgcctatcccggtcgac
gacagcggaatgctgtcgatgtcgcagctgcgtaaagcctcaaatgggcgaccctggtgg
tcagtgtcgagtttcgtgcgtgacgagggtgagtcagctgacaccgaggagcacgtgaac
tacgtcgacttcgtcaccatcaatgtgaacggcggccccgttctgaaaccctcaagcgtg
gaagctaccggagctacgattagtctgctgagcgagaggcttgctgctggttggcacgcc
attgttactgcacgggggatcggcctggttgaacgagccagggatgtgctttctgaggcg
ggagccgcggctcggctggtcgccgagttgccagaagtgctcgaagacggtgtggtctac
ttggttcccggtactgcttcgagcggtttcgagagcgacgaagcgaaactactgttggtt
tcggaggcagagttcttcggccgcgccgtttcgagtcaggcagcaactggacagaaactt
gcaaagcgtcgcggcaagaatgtggtggatccgctgaagctcgtcgctggcgattacgtt
gtgcacgagacccacggcatcgggcgatttgtagaattgacccagcgtatggtgccaacc
gggatcggtcgcgacgcgacaaaggctttgcgtgagtacctggtgctcgagtacgcgtca
actaaacggggtatgccgaaagacaagctgtacgtgccgactgatcagcttgatcaactc
tcgcgctacgttggcggcgaagcccccgcgctctcgaaaatgggcggcaacgactgggcc
aacgccaaaaagaaggcgcgcaaggccgtgcgagacatcgcggtggagctggtcaaactg
tactccgcccgagtggcctcaaaaggctttgccttctcgtctgacacaccgtggcagcat
gagcttgaagaagccttccctttcgccgagactctcgaccagctcaccaccattgacgag
gtgaagcgtgacatggagaagccgatccccatggaccggctcgtcgcgggagacgtcggg
ttcggtaagaccgaggtggccgtgcgcgcggccttcaaagcggtgcaagacggcaaacag
gttgccatgctcgtgccaaccacgctgctggtcaatcagcacctcgaaacattccaggat
cgcttcgctgggttcccggtgcagctcaggccactcagccgtttccagaccgacaaagaa
tcgaaagaaaccattgaggggctcgccgctggcaccgtcgacgttgtgatcggcacacac
cggctgctgtccgagaacgttctctacaaagacctcggcctggtcatcattgacgaagag
cagcgttttggggtcgagcacaaagacaagctcaagaagctgaagacaaacgtcgacatt
cttgcgatgagcgcgacgccgatcccgcgtacgctcgagatggcggtgaccggcattcgc
gagatgtcgacgctcgccacggcaccggaagaccggcacccaattctgacctttgtgggc
ccccgaagcgacaagcagatcggagccgcgatccggcgtgaaatgctgcgcgaggggcaa
gtgttcttcgtccacaacagggtctcctcgatctcaagggtcgctgcccagatcgcggaa
ctcgtgcctgaggcacgtgtcgcggttgcccacggcaaactcagtgaacaccaactcgaa
caggtggtgcaagacttctgggagcgcaagtacgacgtgctcgtctcgaccaccatcatt
gagaccggcctcgatattgcaaatgcaaacaccatcatcattgacgctgccgacaagtac
ggcctgagccagctccatcagctgcgcggccgtgtcgggcgaagccgagagcgcgcctac
gcctacttcctctacgaccccgacaagcccctcaccgagcacgctcacgaacgcctcgag
acgctcgccaccaacaacgagctcggcgctggaatgcaggtcgctctcaaagacctcgag
ctacgcggtgcaggcaatctgctcggaggcgaacaatcaggccatatcgcgggtgttggg
tttgacctttacttgcgcatgatcggtgaggccgtgagcacgttcaaaggcgaagatgtg
cagagcaacaccgaattggtgcttgaactgccggtggacgctcacattcccgaggaatac
gttgagagtgagcggctgcggctcgaggcctatcagaagttctcggcggcgtcgcacccg
caagcccccgaagaccacgttgccctggtgctcgaggaactcaccgaccgctatggagaa
ccgcccgaagaggtgcagcggctcgccgcggtatcggcgctgcgtcgccgggcatcccga
ctcggactcaccaaggtggtcgccgcgggccccgcgctgcgcctcgaaccggtaaagctg
ctcgactcacgaaagatgcgtatgaatcgcatgtatcccggctcgcgttacaccgaggcg
agccagagcctgcagattccgctgccgggcggcaccgcctcgtctcgtagcccgctcgcc
ggtgttggtcagcgccacgttggcgacgagggcgacgtggctgcctggaccggtcgggtg
cttgccacgctgctagaagaggatgcgccagcggttacttga
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integrated database retrieval system
