Lentzea guizhouensis: BBK82_10380
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Entry
BBK82_10380 CDS
T04448
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
led
Lentzea guizhouensis
Pathway
led03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
led00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBK82_10380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
led03400
]
BBK82_10380
Enzymes [BR:
led01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBK82_10380
DNA repair and recombination proteins [BR:
led03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBK82_10380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
Glyco_tran_WecG
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
ANZ36409
UniProt:
A0A1B2HFA0
LinkDB
All DBs
Position
complement(2075552..2079106)
Genome browser
AA seq
1184 aa
AA seq
DB search
MPLLGLLDGVLPDKALRTLIDSAGVPELALDGPLAARPLVAASLSTVRPVLAVTATGREA
EELTNVLRDLIGADQVAFFPSWETLPHERLSPRADTVGARLQVLRRLKHPAGNPVKVLVT
TVRSLIQPMAPGLGDLAPVHLVVGEEQDFAELVTRLAENAYTRVDMVEKRGEYATRGGIL
DIFPPTAEHPYRVEFWGDEVSEIRPFSVQDQRSLPEEVQEFVAPPCRELLLTDDVKQRAA
DLAQEHQSDAHLAEMLEKISNGIAVEGMEALIPALCPGELQMLTDVVPKGTHVLLNDPEK
IRARAADLVRTGQEFLEASWMAAAGGGKAPIDLGRSAYQGLGEISEAARAGDRPWWTLSQ
LTTDAADVVHLDVKPVEAYSGDVERAFADLKAHTATGGAAVLVVPGAGTAHRAEERLKEA
EVAAVCVESLDEAPKAGVVTVVRGALEDGFVLPDLALVVLTETDLTGGRGGTSTKDMRKM
PSKRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVAGATREYLVLEYASSKRGQPGDR
LFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKSKARKAVKQIAAELVQLYAARQSAPG
HAFASDTPWQRELEDAFAFTETQDQMAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVR
AAFKAVQDGKQVAVLVPTTLLAQQHLNTFAERMRQFPVNVKGLSRFTDPQESERTIAGLA
DGEVDIVIGTHRLLQKTVRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIP
RTLEMSLAGIREMSTILTPPEERHPILTYVGAYDDKQVGAAIRRELLRDGQVFFVHNRVS
SIEKAARRIRDLVPEARVVTAHGQMNEDKLEKIIQGFWEREFDVLVCTTIVETGLDISNA
NTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPAETPLTETAHDRLATIAQNTELG
AGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRKHAGADGGEVEEE
LAEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAASDEPALQAVWDELKDRYGTPPEPVE
RLLGVARLRHTCRRHGVTEVIAMGQNIRFAKLELLDSQLVRLRRLFPKAVYKQAMGTVTV
PRPTEGAAGGRMGAPQLRDQELLDWCGAFLDSLAGTPVTPVTTA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgctcggcctgctcgatggtgtcctgcctgacaaagccctccgcacgttgatc
gactcggcgggtgtgcccgagctggcgctcgacggtccgctggccgcccgcccgctggtc
gccgcctcgctctcgacggtcaggccggtgctcgccgtcaccgcgaccgggcgcgaggcc
gaagagctgacgaacgtcctgcgcgacctcatcggggcggaccaggtggcgttcttcccg
agctgggagacgttgccgcacgagcgcctcagcccgcgcgcggacacggtcggtgctcgc
ctgcaggtgctgcgccggctcaagcaccccgcgggcaacccggtcaaggtgctggtcacg
accgtccgcagcctcatccagccgatggcgcccggcctcggcgacctcgcgccggtgcac
ctcgtggtcggcgaggagcaggacttcgccgagctggtcacgcgcctggccgagaacgcc
tacacccgcgtcgacatggtcgagaagcgcggcgagtacgccacccgcggcggcatcctc
gacatcttcccgccgaccgccgagcacccctaccgcgtcgagttctggggcgacgaggtc
agcgagatccggccgttctcggtgcaggaccagcggtcgctgccggaggaggtccaggag
ttcgtcgcgccgccgtgccgtgagctgctgctgaccgacgacgtgaagcagcgcgcggcg
gacctggcgcaggagcaccagtccgacgcgcacctggccgagatgctggagaagatctcg
aacggcatcgcggtcgagggcatggaggcgttgatcccggcgctgtgccccggcgagctg
cagatgctcacggacgtggtgcccaagggcacgcacgtgctgctcaacgacccggagaag
atccgcgcccgcgccgccgacctggtgcgcaccggccaggagttcctggaagcgtcctgg
atggccgccgccggcgggggcaaggcgccgatcgacctcggccgcagcgcctaccagggc
ctcggcgagatctccgaggccgcgcgcgccggcgaccgtccgtggtggacgctcagccag
ctcaccaccgacgccgccgacgtggtgcacctggacgtcaagccggtcgaggcctactcc
ggcgacgtcgagcgggcgttcgcggacctcaaggcgcacacggccacgggtggcgcggcg
gtgctcgtcgtgcccggcgccggtaccgcgcaccgcgccgaggaacggctcaaggaagcc
gaggtcgccgccgtctgcgtcgagtccctcgacgaggcgccgaaagccggcgtggtcacg
gtcgtgcgcggtgcgctcgaggacggcttcgtgctgccggacctcgcgctggtcgtgctg
accgagaccgacctcaccggcggtcgcggcggcacgtccacgaaggacatgcgcaagatg
ccgtcgaagcggcgcaacgcggtggacccgctggcgctcaaggcgggtgacttcgtggtg
cacgagcagcacggcatcggcaagtacgtggagatggtccagcgcacggtcgccggcgcc
acccgcgagtacctggtgctggagtacgcgtcgtcgaagcgcggtcagccgggcgaccgg
ctgttcgtgccgaccgaccagctcgacgaggtgtcgaggtacgtcggcggtgagctgccc
acgctcaacaagctcggcggcagcgactggaagaacacgaagtccaaggcgcgcaaggcg
gtcaagcagatcgcggccgagctcgtgcagctctacgcggcccgccagtccgcccccggt
cacgcgttcgcgagcgacacgccgtggcagcgcgagctggaggacgcgttcgcgttcacc
gagacgcaggaccagatggccgcgatcgacgaggtcaaggccgacatggaacgcggcgtg
ccgatggaccgcgtcatctgcggtgacgtcggctacggcaagacggagatcgcggtccgc
gcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctggtgccgacgacgctg
ctggcccagcagcacctcaacacgttcgccgagcggatgcgccagttcccggtgaacgtc
aaggggctcagccggttcaccgacccgcaggagtccgagcggaccatcgcggggctcgcc
gacggcgaggtcgacatcgtgatcggcacgcaccggttgttgcagaagaccgtgcggtac
aaggacctcggcctcgtgatcgtcgacgaggagcagcggttcggcgtggagcacaaggag
cacatcaaggcgttgcgcacgcacgtcgacgtgctcacgatgtccgcgacgccgatcccg
cgcacgctggagatgtcgctcgccggcatccgcgagatgtccacgatcctgaccccgccg
gaggaacggcacccgatcctcacctacgtcggcgcctacgacgacaagcaggtcggcgcg
gcgatccggcgcgagctgctgcgcgacggccaggtcttcttcgtgcacaaccgggtctcg
tcgatcgagaaggccgcgcgccgcatccgtgacctcgtaccggaggcacgggtcgtcacc
gcacacggccagatgaacgaggacaagctcgaaaagatcatccagggcttctgggaacgc
gagttcgacgtcctggtctgcaccacgatcgtcgagaccggcctcgacatctccaacgcc
aacacgctgatcgtcgaacgcggcgacctgctcggcctggcccagctgcaccagctgcgc
ggccgcgtcggccgcggccgggagcgcgggtacgcgtacttcctgtacccggccgagacg
ccgctgaccgagaccgcgcacgaccggctcgccacgatcgcgcagaacaccgagctcggc
gcgggcatggcggtcgcgatgaaggacctggagatccgcggtgccggcaacatcctcggc
gccgagcagtccggtcacatcgcgggcgtcggcttcgacctctacgtgcggctggtcggc
gaggccgtcgaggcgttccgcaagcacgcgggcgcggacggcggcgaggtcgaggaggag
ctcgccgaggtgcgggtcgacctcccggtcgacgcgcacatcccgcacgactacgtgccc
ggcgagcggctgcgcctggaggcctaccgcaagatcgcggccgcctcggacgagccggcc
ctgcaggccgtctgggacgagctcaaggaccgctacggcacgccgccggagccggtcgag
cgcctgctcggcgtggccaggctgcggcacacctgccgccgccacggcgtcaccgaggtg
atcgcgatggggcagaacatccggttcgcgaagctggagctgctcgactcccagctggtc
cggttgcgcaggctcttccccaaggccgtgtacaagcaggcgatgggcacggtgaccgtg
cctaggccgacggagggagcggcgggcggccggatgggtgcaccgcagctgcgtgatcag
gaactgctggactggtgcggtgcgttcctcgactcactggcggggactcccgtgaccccg
gtcaccacggcgtga
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