Leifsonia sp. PS1209: HF024_12810
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Entry
HF024_12810 CDS
T06547
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
leif
Leifsonia sp. PS1209
Pathway
leif03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HF024_12810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leif03400
]
HF024_12810 (mfd)
Enzymes [BR:
leif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HF024_12810 (mfd)
DNA repair and recombination proteins [BR:
leif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HF024_12810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
DUF3638
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QIZ99300
UniProt:
A0A6H1W6I8
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All DBs
Position
complement(2687811..2691443)
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AA seq
1210 aa
AA seq
DB search
MILQGLIAALSRASTFDDALACAARDADFSLTDGLRAPLLAGLMQRRAAAGASQALLVIT
ATGRESESVRGALGCVMPDAEIVEFPAWETLPHERLSPSAEIVGKRLTALRRLADWDAGD
RSRPIVLVASVRAALQPLADNLTDYAAVDLATGARGFDLSGLAMQLVDLAYARVDMVTRR
GEFAVRGGILDVFPPNGDHPYRVDFFGDEVDQIRAFSVADQRSLPEPIASVSLPPSRELL
LSESVRQRAREMEHEFPSMSAMLAKIGEGIPVEGMESLAPALVDRLVPLTHYLPDGAAVA
VLSPERVASRAVSLAETNREFLSAAWSAATVGAAAPIDLAAGDFLTLQKLRDSVTFSKPG
EKAPNHPWWTMSGFQTDAGLDRLPLPEEREIEEHLQLRIAAEAVPSFQGNVTGAIEHIGA
RLKDGWTVAIVAEGAGLVERAADVLSEAELPARHVEEFPADPEPGIAYLLRATVEHGFEV
GETKLALLSESEFYGRTVGYDSRQVKKLATRRKNVVDPLALKPGDYVVHQTHGIGRFVEL
TQREVSSGGRNAVKSKREYLVLEYAPSKRGYPGDKLFVPTDQLDLLTRYVGGEAPALSKM
GGSDWSAAKGRARKAVRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETHDQ
LQTIDEVKADMERPIPMDRLISGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQH
FETFQERFAGFPIHLRALSRFQTDKEAKETIDGMADGTVDVVIGTHRLLADNIVLKDLGL
VIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHP
ILTFVGPYSDKQVAAAIRRELLREGQVFFVHNRVGSITSQAAKLAELVPEARIAVAHGKM
NERALEQVVVDFWERKFDVLVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGR
GRERAYAYFLWDENKPLSETAHDRLSTIAANNDLGSGMQVALKDLEIRGAGNLLGGEQSG
HIAGVGFDLYLRMIGEAVSTFRGEVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKL
STASSPAAKDDQIDQVIEELTDRYGEPPLAVSNLIAVSRLRRAAQRAGLGEVVAMGSNLR
LAPAILPDSLQVRLQRMYPGAKYHAAPKVVTVPMPRINGEPLDDADLISWVATLLGALFP
VPEPVAEAAS
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatactgcagggcttgatcgcagcgctttcgcgcgcctccacgttcgatgacgccctg
gcctgcgcggcccgtgacgccgacttctctctcaccgacgggttgcgggcaccgctgctg
gccgggttgatgcagcgcagagctgccgcaggcgcatcccaggccctgctcgtgatcacc
gccaccgggcgcgagtccgagtccgtccgcggtgcgctcggctgtgtgatgccggatgcg
gagatcgtcgagttcccggcctgggagaccctgccgcacgagcgtctcagcccgagcgcc
gagatcgtgggcaagcggctcaccgccctccgccgcctcgccgactgggatgcgggggac
cggtcgcggccgatcgtcctggtcgcctccgtgcgcgccgccctgcagccgctcgcggac
aacctcaccgactacgcggccgtcgacctggcgaccggcgcacggggcttcgacttgtcc
ggcctcgcgatgcagctggtcgacctggcgtacgctcgcgtcgacatggtcacccgccgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaacggcgaccacccg
taccgcgtcgacttcttcggggacgaggtggaccagatccgcgcgttctccgtggccgac
cagcgctcgctgcccgagcccatcgcgtccgtctcgctgccgcccagccgcgagctgctg
ctgagcgagtccgtgcgccagcgtgccagggagatggagcacgagttcccgagcatgtcg
gcgatgctcgccaagatcggcgagggcatcccggtcgagggcatggagtcgctcgcgccg
gcgctcgtcgaccgactcgtgccgctcacgcactaccttccggatggcgcggccgtcgcc
gtgctctcgccggagcgcgtcgcgagccgtgccgtcagcctggccgagaccaaccgcgag
ttcctgtcggcggcgtggagcgccgccaccgtcggcgccgccgccccgatcgacctggcc
gctggagacttcctcaccctgcagaagctgcgcgactccgtcacgttcagcaagccggga
gagaaggcgccgaaccacccctggtggacgatgagcgggttccagaccgacgccggtctc
gatcgactacctctgccggaggagcgcgagatcgaggagcacctgcagctgcggatcgcg
gcggaggccgtcccgagcttccagggcaacgtcaccggcgccatcgagcacatcggggcc
aggttgaaggacggctggaccgtcgccatcgtcgcggagggcgccgggctcgtggagcgc
gcggccgacgtgctgtcggaggccgagctgcccgcccggcacgtcgaggagttccccgcc
gatcctgagcccggcatcgcctatctgctgcgggcgacggtcgagcacggcttcgaggtc
ggcgagaccaagctggcgctgctcagcgagagcgagttctacggcaggacggtcggctac
gactcccgccaggtgaagaagctcgccacgcggcgcaagaacgtggtcgaccctctggcg
ctgaagccgggcgactacgtcgtgcaccagacccacggcatcggccggttcgtcgagctg
acccagcgcgaggtgtcgagcggcggccgcaacgcggtcaagtccaagcgcgaatacctc
gtgctcgagtacgcgccgtcgaagcgcgggtacccgggcgacaaactcttcgtgcccacc
gatcagctggatctgctgacccggtatgtgggcggtgaggctcccgcgctcagcaagatg
ggcggaagcgactggtcggcggcgaagggccgcgcccgcaaggctgtccgcgacatcgcg
gtcgagctggtcaagctgtactccgcgcggatggcgagcaagggccacgcgttcgggccg
gacaccccgtggcagcgcgagctggaggaagcgttcccgttcgcggagacccacgaccag
ctgcagaccatcgacgaggtgaaggccgacatggagcggcctatcccgatggacaggctc
atctcgggcgatgtcggcttcggcaagaccgagatcgcggtgcgtgcggcgttcaaggcg
gtgcaggacggcaagcaggtcgtgatgctcgtgccgaccacgctgctcgtgaagcagcac
ttcgagacgttccaggagcgcttcgccgggttccccatccacctgcgcgccctcagccgg
ttccagaccgacaaggaggcgaaggagacgatcgacggcatggcggacggcaccgtggat
gtggtcatcggcacccacaggctcctcgccgacaacatcgtgctcaaagacctcggcctc
gtcatcatcgacgaggagcagcggttcggcgtcgagcacaaggacgcgctgaagaagctc
aagaccaacgtggacatcctggcgatgagcgcgacgcccatcccgcgcacgctggagatg
gcggtcaccggcatcagggagatgtcgacgctggccacccctccggaggacaggcacccc
atcctgaccttcgtcgggccgtactcggacaagcaggtggccgcggccatccggcgcgag
ctgctgcgcgagggccaggtgttcttcgtgcacaaccgggtcggcagcatcaccagccag
gcagcgaagctggccgagctggtgccggaggcgcgcatcgcggtggcgcacggcaagatg
aacgagcgggcgctcgaacaggtggtcgtcgacttctgggagcgcaagttcgacgtgctc
gtgtcgaccacgatcatcgagacaggcctcgacatcgccaacgcgaacacgatcatcatc
gaccgcgccgacaagtacggcctgagccagctgcaccagctgcgcggccgcgtcggccgt
ggccgcgagcgcgcgtacgcgtacttcctctgggacgagaacaaaccgctcagcgagacg
gcacacgacaggctctcgaccatcgccgccaacaacgatctcggcagcgggatgcaggtg
gcgctgaaagacctggagatccgcggagcgggcaacctgctcggcggcgagcagtccggt
cacatcgccggtgtcggcttcgacctctacctgcgcatgatcggcgaggcggtgagcacg
ttccgcggcgaggtcgcggaggggcagaccgagctgcggctggagctgccggtggatgcg
cacatcccggaggagtacgtggacagcgagcgcctgcggctggaggcgtaccagaagctg
tcgacggccagctcgcccgcggcgaaggacgaccagatcgaccaggtgatcgaggagctg
accgaccgctacggcgagccgccgctcgcggtctcgaacctcatcgcggtgtcccggctg
cggcgtgccgcccagcgggccggcctcggcgaggtggtcgcgatgggctccaacctgcgg
ctggccccggcgatcctgccggactcgctgcaggtgcggttgcagcgcatgtacccgggc
gccaagtaccacgccgcgcccaaggtggtcacggtgccgatgccgcgcatcaacggcgag
ccgctcgacgacgccgacctgatctcctgggtggcgacgctgctcggcgcgctcttcccc
gtgccggagccggtcgcagaggcggcgtcctga
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