Lodderomyces elongisporus: PVL30_001225
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Entry
PVL30_001225 CDS
T01116
Symbol
LIG4
Name
(RefSeq) DNA ligase (ATP)
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PVL30_001225 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_001225 (LIG4)
Enzymes [BR:
lel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PVL30_001225 (LIG4)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PVL30_001225 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
BRCT_3
Poxvirus_B22R_C
Motif
Other DBs
NCBI-GeneID:
5235987
NCBI-ProteinID:
XP_001528736
UniProt:
A5DV70
LinkDB
All DBs
Position
1:complement(join(3388274..3391208,3392096..3392157))
Genome browser
AA seq
998 aa
AA seq
DB search
MPERLHMILLEANIVRLPIPGRRQIPPSLLNFKRMSCFLDQVKSPPPNDLDPTLTFLTNE
LFDKIYGVSRNNLGQAKTITERKAQIINEFIDSFKLFIGQDMFPSAKLIFPEKAGRLYFI
KETVLARHIIKMYNIPKDTEDYNLLYHWGKQYHKSKRFAVDERKIRDLPLQASRVIAKRR
PITETFEEYSVPKINSILDDLTLAKKSQEQRELLQPLFNKLRIEEIRWLIHILLKKAILT
HMDKYFFNSWHPQGYRLYSLCNNLETTFNILGTYPNKEFTKADLSIHPRFKFKPQLAEKL
STGYDTVVKKLQKKEPMDPQYEAKYTAMGLESKFYIEEKMDGDRMLLHKEGNNFKFYSRR
LKDYSFLYGETFQFGSLTKYLRDAFVKNVNSVILDGEMIAYDYERQVILPFGTLKSSAIQ
ESVRQFTTIDQYDQQTSYPYYVIFDIVYLNGKDLSNYPLFFRKSILERIINPVPHRFEVH
DVRLGSTAQDIERAIREVVTSRSEGLVLKHTQSKYVIDGFRNPNWIKVKPEYLETFGENL
DLVVIGKNPATKNSYMVGLCNADDGSYYSFAMIANGFEVEEYDKIERLTHNKWIDCQKRL
PPESIIKFGKKKPVYWINPKDSVVLEVKARSIDVRPEETYAVGSSLHGNFCRRIREDKAV
NECLTLQEYKKLKAEYSKNLHRPQTAARKRDKWSVSALGSFDDPFALQKLKKIKLESDLF
FPFEFLIMSDKRSPNNEVITVEELKALVKRYGGKVVNSVDGKSAQQLIAITEKELPVSSR
LLKQGIDLVKPSWILECIKRNQIMQIEPHFLFATRNWPVYSARVDEYGDSFIIYNAMDEI
SAPLLSATELSKLREKFDWDNDVGGKRGMEEVNVDSTTMTATTTIAKPLLYLFKDVVFYV
IGSSLAGDLLRERIERFGGTVADDYLKSGFIVVSQWEEKNNRSLVLFKLKKYYQKINDDL
VIIDGKFMSKLPHTVTELFIDKCIEMNSVADPEDYKFS
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgccagagaggttgcatatgattttgctcgaggcaaatatcgtgcgcttaccaattccg
gggcgccgccagattcccccgtccctcctcaactttaagcgaatgtcctgctttctagac
caagttaagtctccacctcctaacgatctagacccaaccctcacttttttaactaatgaa
ttgtttgacaagatttatggcgtctcgcgcaataatttgggccaagccaagactatcaca
gagcggaaagcccagataatcaatgagttcatagacagtttcaaattgtttattggccag
gatatgtttccctcggccaaattgatttttcctgaaaaagccggaaggctatactttatc
aaggaaactgttttggcgaggcatattataaagatgtataatataccaaaggataccgag
gactataatttattataccattggggcaagcagtaccacaaatcgaaaaggtttgctgtt
gatgaacgtaaaattagagatcttcctttacaggcatcaagagtcattgcaaaaagaaga
ccaattactgaaacatttgaggagtattctgttccaaaaattaattcgattttggacgac
ttgactcttgccaaaaagtcacaggaacaaagggagctcctccagccattgttcaacaag
ctacgaatcgaagaaattagatggctcattcacattttgttgaaaaaggcgattctcaca
cacatggacaagtattttttcaatagttggcaccctcaaggatatagactctatagctta
tgcaataacctagaaacgacattcaatattttgggaacatatcccaataaagagtttaca
aaagctgatttaagtatccatccgcggttcaaattcaagccacagttggcagagaaatta
agtacagggtacgatactgtggttaagaaattacagaaaaaggagccaatggacccacaa
tacgaagctaaatatactgcgatggggttggaaagtaaattttacattgaagaaaaaatg
gatggcgataggatgcttctacataaggaaggcaataatttcaaattttactcaagaagg
ttgaaagattattcttttctatatggcgagacatttcaatttggatcattgacaaagtat
ttgcgagacgcatttgttaaaaatgtcaattctgttatccttgatggagaaatgattgcg
tacgattacgagagacaggtgattttgcctttcgggaccttgaagtcgctggcgattcaa
gagagtgttcgacagtttaccacgattgatcagtacgaccaacaaacaagctatccttat
tatgtgatatttgatattgtatacttaaatgggaaagatcttagtaactatcccctattt
ttccgaaaaagcatcctcgaacgtatcataaatcccgtgccacatcgatttgaagtacat
gacgttagacttggctcaacagctcaagatattgaaagagccattcgtgaagtagtcaca
agtagaagcgaaggattggtgctcaaacatacacagctgaaatatgtcattgatgggttt
agaaatccaaattggataaaagtgaagcctgaatatttggaaacatttggtgaaaatttg
gatcttgttgttataggaaaaaatccagctactaaaaactcgtatatggtgggtctttgc
aacgccgatgatggctcctattatagctttgctatgattgcaaatgggtttgaagttgaa
gaatatgacaaaattgagcgattgactcataacaaatggatagattgccaaaagagatta
cctccagaaagcatcataaaatttggcaaaaagaaaccagtatactggattaatccaaag
gactcagtggttttagaagttaaagcccgctctattgacgtgagaccggaagaaacctat
gccgtcggctcttcattgcatggaaacttttgccgcagaatcagagaagataaggccgta
aatgagtgtttgacattacaagaatacaagaaattaaaagctgaatactctaagaattta
catcgtcctcaaacagcagcacggaagagggataaatggagtgtatctgctttgggatca
tttgatgacccgtttgccttacaaaagttgaaaaagattaaacttgagtctgatttattt
tttccttttgagtttttaataatgagtgataaaagaagcccaaataatgaagtcattaca
gtggaggaactcaaggcattggtcaaaagatatggaggtaaggttgttaattcggttgat
ggaaaatctgcccagcaattgattgccattacagagaaagaattaccagtgagcagtaga
ctcctcaagcaaggaatagacttggtcaaacccagctggatcttggaatgtattaaaaga
aaccaaataatgcagattgagccacattttttattcgcgactaggaattggccagtgtat
tctgctagagttgatgagtatggagactcatttatcatttataatgccatggatgaaatc
agtgcgccattacttctggcaacagaattaagtaaactccgcgaaaagtttgattgggat
aatgatgtgggtggaaaaagaggcatggaagaggtaaatgttgattcaacgacaatgaca
gctacaactacaatagctaaaccattattgtacttgttcaaagacgttgtgttttatgtt
ataggttcttcattggcaggtgatctcttgagagaacgaattgagcgatttggcgggact
gttgccgatgattatctcaaaagtggcttcattgttgtttctcaatgggaagagaaaaat
aatcgcagtttggtattgttcaaattgaaaaagtattaccagaaaatcaatgatgattta
gtcattatcgatggaaaattcatgtccaagcttccacatactgttacagaattattcatt
gataagtgcattgaaatgaatagtgttgcagatccagaggactataagttttcttaa
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