Lodderomyces elongisporus: PVL30_003009
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Entry
PVL30_003009 CDS
T01116
Symbol
ROK1
Name
(RefSeq) RNA-dependent ATPase rok1
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
lel
Lodderomyces elongisporus
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lel03009
]
PVL30_003009 (ROK1)
Enzymes [BR:
lel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVL30_003009 (ROK1)
Ribosome biogenesis [BR:
lel03009
]
Eukaryotic type
90S particles
Helicases
PVL30_003009 (ROK1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
5232406
NCBI-ProteinID:
XP_001525591
UniProt:
A5E1N2
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All DBs
Position
3:1893995..1895656
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AA seq
553 aa
AA seq
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MDIFRILSRGASINKKKDQTSTNSSLIKSSSPSTANKHEHLLDEVERETDFFRTKSHRKS
DEPSSKILKSKNKDEERESVAEIVPPLELESEEDARVFRNSHKSKVTGDDIPIPIGSFQD
MIGRFKIDKRVLSNLLDAEFVEPTPIQCEAIPITLTNRDLIACAPTGSGKTLAFLIPLLQ
QLVSQNVSKNHGIRGLIISPTNELAVQIFQQLEIISKGKGLNIAILSKQLAGKISNDVVK
ASKYDILVSTPLRLIDVVKLGKVDLSKVTQLVIDEADKLFDHGFAEQTDELLSHCTNVKI
RKSMFSATIPSGVEEMAHSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMI
QNGEFKPPIIIFLQSITRAKALFHELVYDKLNVDVIHAERTPKQRDEVIKRFKNGDIWVL
ITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDKAVKP
IINVMKQSGCTDGLSDWMEDLGKLSKREKRAVKTHEIERKKISTVPSVIKQKRKQRQNMI
EASKRRKQAESEQ
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggatattttcaggattcttagtagaggtgccagtatcaacaagaaaaaggatcaaacg
tctaccaactcatcacttatcaaactgtcactgccgagtactgcgaataaacatgaacat
cttcttgatgaggtcgagagagaaacagactttttcagaacaaaaagtcaccgcaaactg
gacgaaccatcatcaaaaatcttaaagtccaaaaacaaggacgaagaacgtgaatctgtt
gcagaaattgtacctccacttgagttagaaagtgaagaggacgcaagagttttccgaaat
ctgcataaatcgaaagttacaggtgatgatataccaattccaattgggtcatttcaagat
atgattggaaggttcaaaattgataaaagggtgctctccaatttgttagacgcagagttt
gttgagccaacacccattcagtgcgaagctatccccattacattgaccaatagagacctt
atcgcgtgtgcaccaactggttctggtaagactttggcatttttgataccattactccaa
caactcgtttctcaaaacgtgctgaaaaaccacggcataagaggactcatcatttcacca
acaaacgagttggctgttcaaatattccagcagttggaaattatctccaaaggtaaaggt
ctcaacatagcaatcttatccaagcagttagctggtaaaataagtaatgacgttgtcaag
gcctcaaaatatgatatccttgtctctaccccattaagacttatcgatgttgtcaagcta
ggcaaagttgacctttcaaaagtcactcaacttgttattgatgaggcagacaaattattt
gatcatggatttgccgagcagacagatgagttgttatcccattgcacaaacgtcaagatt
aggaaatccatgttttcagcaacgatcccttcaggtgtcgaggaaatggctcactcgatc
atgaaggacccaataagggtcattattggccacaaagaagcagcaagtaacacgattgag
cagaaattagtgtttacaggaaacgaagaaggtaaattattggcaatcagacagatgatc
cagaacggtgagtttaaacctcccattattatatttttgcaatcgattaccagagccaaa
gctcttttccatgaattggtatatgataagctcaacgtcgatgtcatacatgcggagaga
accccaaagcaaagagatgaggtgatcaaacgttttaaaaatggtgatatatgggttttg
ataacaactgatgttcttgcaagaggtgtcgacttcaagggcgttaacatggtcatcaac
tatgatgtacctcagagtgcccaggcttatgtacacagaataggtagaactggtcgaggt
ggtcgttctggaaaagctgttacatttttcacaaaggaagacgacaaggctgtcaagcca
ataatcaatgttatgaagcaatcaggatgcacagatggactcagcgattggatggaggat
ttgggaaagctttcaaaaagagaaaagcgagcagttaagacgcatgagattgaaaggaaa
aagattagtacagtaccgagtgttattaagcaaaagaggaaacaaagacaaaatatgatt
gaggcttcaaaacgaaggaagcaagccgagtcagaacaataa
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