Lodderomyces elongisporus: PVL30_005520
Help
Entry
PVL30_005520 CDS
T01116
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lel
Lodderomyces elongisporus
Pathway
lel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PVL30_005520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_005520
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_005520
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PVL30_005520
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PVL30_005520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFIA_Pcf11
CID
VHS
CAP_N
EXOSC1
DUF6078
Motif
Other DBs
NCBI-GeneID:
5231249
NCBI-ProteinID:
XP_001523973
UniProt:
A5E597
LinkDB
All DBs
Position
8:473486..475309
Genome browser
AA seq
607 aa
AA seq
DB search
MTDVLTEYKRRLSELTFNSQPIITELTQKAKSHLELADQIMDLITERIHNTIPEQKLFAL
YVLDDICKVVGNPYNILIGDEIYDIFIHVFQMNNDVIREKMVRLFNTWKVSTLRNTKILI
FPKDQLNKIDQFLKKAGYPKKRAIDNTNSQLQQQQQQQQQQQKQQQQQQQFTVPVVGLPP
KPGVSIQQSLINDIDQLIPVFERQISNGGHNDPKLPDRLKALNRLKILLGSKEMKPAELE
AIKSHIVNIQIQTSQAQAQAQLQAQSQSQTPTPVPVTPATTPQPKINPAIRLFQELIFSG
LVAKDQEPIPGSKPVYTLMFPEVKYSAKQSPLGENDNLEDILLQSSSIQRSEYEKLKFVE
LMSVMKKTSTFSTTTNTNNINNINNNNNNNNNISGTGDLQHFINSNKPTSNLTSLLYGAK
PSKCSICGKRFTVDVDGTTKKRLHLDWHFRMNKKQSVKGGNIQSRNWFLDDYDWVQFDED
SLSEYASVNNSNGNNKNNNSNSDIGFNSNKSGISGPQSASNGAAGSFQSSTYVVVPPNDT
NMNNRCLICREQVRAKYNDEIGEWVWNECIRQPGEKNGRRIVHVSCYNDRKRAADADLNA
NVKREKY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgttcttacggagtataagagaaggctctctgaactaacattcaattcacaa
cctatcattactgagctaactcaaaaagcgaaactgcatctcgaacttgctgatcagatt
atggacttgatcacggaacgtatccataatactataccggaacaaaaactatttgcatta
tatgtgctcgatgacatatgcaaagttgttggtaatccatacaacatattgattggcgac
gaaatttacgatatattcatccatgttttccaaatgaataatgatgtaattagagaaaaa
atggttcgattgtttaatacttggaaagtgagcacattgcgaaataccaagattttgata
tttcccaaagatcagttaaacaagattgatcaatttttgaaaaaggcaggatacccaaag
aagagagcgattgataacacaaatctgcagttgcagcagcagcaacaacaacaacaacaa
caacaaaagcagcagcagcagcaacaacaatttactgttcctgtagtgggtcttccgcca
aaacctggggtttctatccaacagtctctcatcaatgacattgaccagttaattccagta
tttgaaagacaaatatcgaacggtggccataatgacccaaagcttcctgatagattaaag
gctttgaatagattgaaaatactcttgggctcaaaagaaatgaaaccagcagagttggaa
gcaataaaatctcatatcgtcaatattcaaatacaaacgagtcaagcgcaagcgcaagca
caattacaggcacaatctcaatctcaaacaccaacgccagtaccagtcactcctgcaaca
actccacaacccaaaataaatcctgcaataagattattccaagaattgattttttcagga
ttggtagcaaaagatcaggaacctatacctgggtctaaaccagtatacacattgatgttt
cccgaggtcaagtactcagctaaacagtcacctttaggagaaaatgataacttagaagat
atattacttcaaagcagctctatacaacgttctgagtatgaaaaactaaaatttgtagaa
ttaatgagtgtaatgaagaaaacgtctactttttctaccactactaatactaataatatc
aacaatattaacaataataacaacaacaacaacaacatcagtggtacaggtgacttgcaa
catttcatcaattcaaacaaacctacatctaatttaactagtttgctttacggcgccaag
ccttcaaagtgctccatatgtggcaaaagattcactgttgatgttgatggaaccacaaag
aaaagattacacctcgattggcatttcagaatgaataaaaagcaaagtgtcaaaggaggc
aacattcaatcgagaaattggttcctagacgattacgattgggtacagtttgacgaagat
agcttatctgaatatgcgtcagttaacaacagcaacggtaataacaagaataacaatagc
aatagcgacatcggtttcaattccaataagagcggtatatcagggccacaactggcgtca
aatggcgccgcaggttcttttcagagtagtacatacgttgttgttccaccaaatgataca
aatatgaacaataggtgtctcatttgtagagagcaagtgagggctaagtacaatgacgag
attggtgagtgggtatggaatgaatgtattagacaaccgggagagaagaatggtaggagg
attgttcatgtgagttgctataatgatcgcaaaagggcagccgatgctgatttgaatgcc
aatgtgaaacgggagaaatattga
DBGET
integrated database retrieval system
