Lysobacter enzymogenes M497-1: LEN_3345
Help
Entry
LEN_3345 CDS
T04598
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lem
Lysobacter enzymogenes M497-1
Pathway
lem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LEN_3345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lem03400
]
LEN_3345 (mfd)
Enzymes [BR:
lem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LEN_3345 (mfd)
DNA repair and recombination proteins [BR:
lem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LEN_3345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_30
ERCC3_RAD25_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAV98832
UniProt:
A0A1J1EMC9
LinkDB
All DBs
Position
4171730..4175185
Genome browser
AA seq
1151 aa
AA seq
DB search
MSLLPKTGQQRAWWRAPASPSALAWAIARAAGEHDGPLLAVTRDNHGAHQLEADLRTLLG
VAGAADGALPVLPFPDWETLPYDVFSPHPDIVSQRLSALHRLPALKRGIVVVPVQTLLQR
LAPLRHVIGGSFDVRVGQRLDLDSEKRRLETAGYRNVPQVLDPGDFAVRGGLLDVYPMGA
DSPFRVELLDDEIETIRAFDPESQRSLDKIERVHLLPGREVPLDEASLKRALDALRERFD
LDTRRSALYQDLKAGLAPSGIEYYLPLFFEQTASLFDYLAGNVLPVIADGALDAADAFWA
HTGERYEQRRHDIERPLLPPDQLYLTPVGLRERLNQGERIELCGEQHPQRARALALGEQP
APSLPVAARDVAPAEALKSFLANYPGRVLIAADTAGRREALLEVLQSAGLRPEVVADWTA
FRDGAARFAIAVAPLDDGFAIDEPALAILTERQLFPERASQPRRRKRVGREPEAIIRDLG
ELSEGAPIVHEDHGVGRYRGLIVLEAGGQPGEYLEIEYAKGDRLYVPVAQLHLISRYSGA
SVETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLALDVDRAMYEPFAA
AFPFEETPDQHSSIEAVIRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFVAAAAGKQVAVL
VPTTLLAEQHYRNFRDRFADWPLKVEVLSRFKSSKEIKAELEKLTEGKIDVVVGTHRLLQ
SDVRFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSI
IATPPAHRLAVQTFVVPWDDMQLREAFQRELSRGGQVYFLHNDVESIGRMKRQLEELVPE
ARIGIAHGQMAERELESVMLDFHKQRFNVLLCTTIIESGIDIPNANTIIMNRADKFGLAQ
LHQLRGRVGRSHHRAYAYLVIPDQRSITADAQKRLEAIASMDELGAGFTLATHDLEIRGA
GELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDVDSTDARGAEVELHIPALIPED
YLPDVHTRLTLYKRVSGARSSEELRELQVEMIDRFGLLPDAAKHLFAVAELKLGATALGI
RKLDLGDKGGRLQFVERPNVDPMSIIKMIQGQPKLYQMDGPDKLRIKLELPDAPARLAAA
KGLLMLLDTKH
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctgctgcccaaaaccggccagcagcgcgcctggtggcgcgcgccggcctcgcct
tccgcgctggcgtgggcgatcgcccgcgccgccggcgaacacgacggcccgctgctggcg
gtgacccgcgacaaccacggcgcgcaccagctcgaagccgacctgcgcaccttgctcggc
gtcgccggcgcggccgacggtgcgctgccggtgctgccgttcccggattgggagacgctg
ccctacgacgtcttcagcccgcatccggacatcgtctcccagcgcctgtccgcgctgcac
cgtctgcccgcgctcaagcgcggcatcgtggtggtgccggtgcagacgctgctgcaaagg
ctggcgccgctgcgtcatgtcatcggcggcagtttcgacgtgcgcgtcggccagcgcctg
gacctggacagcgagaagcgccggctcgaaaccgccggctaccgcaacgtgccgcaagtg
ctcgaccccggcgatttcgccgtgcgcggcggtctgctcgacgtctacccgatgggcgcc
gattcgccgttccgggtcgagctgctcgacgacgagatcgaaaccatccgcgcgttcgat
cccgaatcgcagcgctcgctcgacaagatcgagcgcgtgcacctgctgccgggccgcgaa
gtgccgctcgacgaggcttcgctcaagcgcgcgctggacgcgctgcgcgagcgcttcgac
ctcgacacccgccgcagcgcgctgtaccaggacctcaaggccgggctggcgccgtcgggc
atcgaatactacctgccgctgttcttcgagcagaccgcgagcttgttcgattacctcgcc
ggcaatgtgctgccggtgatcgccgacggcgcgctggacgcggccgacgcgttctgggcc
cacaccggcgagcgctacgagcagcgccgccacgacatcgaacggccgctgctgccgccg
gaccagctctacctcaccccggtcggcctgcgcgaacgcctcaaccagggcgagcgcatc
gagctgtgcggcgagcagcacccgcaacgcgcgcgcgcattggcgctgggcgagcagccc
gcgccgagcctgccggtggccgcgcgcgacgtcgcgccggccgaagcgctcaagtcgttc
ctggccaactatcccggccgcgtgctgatcgccgccgacaccgccggccgccgcgaggcg
ttgctggaagtgctgcaatccgccggcctgcgccccgaggtcgtcgccgactggaccgcc
ttccgcgacggcgccgcgcgcttcgccatcgccgtggcgccgctggacgacggcttcgcc
atcgacgaaccggcgctggcgatcctgaccgaacgccagctgtttcccgaacgcgcctcg
caaccgcgccggcgcaagcgcgtcggccgcgagcccgaagcgatcatccgcgacctgggc
gagctgtccgaaggcgcgccgatcgtgcacgaggaccacggcgtcggccgttaccgcggc
ctgatcgtgctcgaagccggcggccagcccggcgaatacctggaaatcgaatacgccaag
ggcgaccggctgtacgtgccggtcgcgcagttgcacctgatcagccgctactccggcgca
tcggtggaaaccgcgccgctgcattcgctcggcggcgagcagtggaccaaggccaagcgc
aaggccgcggagaaagtccgcgacgtcgccgccgaattgctggagatccaggccaagcgc
caggcccgcgccggcctggcgctggatgtggaccgggccatgtatgaacccttcgccgcg
gcgttcccgttcgaggaaacgcccgaccagcattcctcgatcgaggcggtgatccgcgac
ctcggcagcagtcagccgatggaccgcgtggtctgcggcgacgtcggcttcggcaagacc
gaagtcgcggtgcgcgcggccttcgtcgccgccgccgccggcaagcaggtcgcggtgctg
gtgccgaccacattgctggccgagcagcactaccgcaacttccgcgaccgcttcgccgac
tggccgctcaaggtcgaggtgctgtcgcgcttcaagagcagcaaggagatcaaggccgag
ctggagaagctcaccgaaggcaagatcgacgtggtggtcggcacccatcgcctgctgcag
agcgatgtgcgcttcaaggacctgggcctggtcatcgtcgacgaggaacagcgcttcggc
gtgcgccagaaggaagcgctcaaagcgctgcgcgccaacgtgcacctgctgaccctgacc
gcgacgccgatcccgcgcacgctcaacatggccatggccggcctacgcgacctgagcatc
atcgccactccgccggcgcatcgcctggccgtgcagaccttcgtcgtgccctgggacgac
atgcaactgcgcgaggcgttccagcgcgagctctcgcgcggcggccaggtctatttcctg
cacaacgacgtcgagagcatcggccggatgaagcgccagctcgaagaactggtgccggaa
gcgcgcatcggcatcgcccacggccagatggccgagcgcgagctggagagcgtgatgctc
gacttccacaagcagcgcttcaacgtgctgctgtgcacgaccatcatcgagtcgggcatc
gacatccccaacgccaacaccatcatcatgaaccgcgccgacaagttcggcctggcccag
ttgcaccagctgcgcggccgcgtcggccgttcgcaccatcgcgcctatgcgtatctggtg
atcccggaccagcgttcgatcaccgccgacgcgcaaaagcgcctggaggcgatcgcctcg
atggacgagctgggcgccggcttcaccctggccacccacgacctggaaatccgcggcgcc
ggcgaactgctcggcgaggaccagagcgggcagatggccgaggtcggcttcagcctgtac
accgaactgctggaacgcgcggtgcgctcgatccgccagggcaagctgccggacgtggat
tccaccgacgcgcgcggcgccgaagtcgagctgcacattccggcgctgatccccgaggac
tacctgcccgacgtgcacacccgcctgaccctgtacaaacgcgtcagcggcgcgcgcagc
agcgaggagctgcgcgaactgcaagtggagatgatcgaccgcttcggcctgctgccggat
gcggccaagcacttgttcgcggtggccgaactcaagctcggcgcgaccgcgctgggcatc
cgcaagctcgacctcggcgacaagggcggccgcctgcagttcgtcgagcgtcccaacgtg
gatccgatgtcgatcatcaagatgatccagggccagcccaagctctaccagatggacggg
ccggacaagctgcggatcaagctggaactgccggacgcgccggcgcggctggcggcggcg
aaggggttgttgatgttgctcgataccaagcactga
DBGET
integrated database retrieval system
