Leptolyngbya sp. NIES-3755: LEP3755_12800
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Entry
LEP3755_12800 CDS
T04199
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
len
Leptolyngbya sp. NIES-3755
Pathway
len03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
len00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LEP3755_12800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
len03400
]
LEP3755_12800
Enzymes [BR:
len01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LEP3755_12800
DNA repair and recombination proteins [BR:
len03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LEP3755_12800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAU10788
UniProt:
A0A0S3TZX4
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All DBs
Position
1379356..1382802
Genome browser
AA seq
1148 aa
AA seq
DB search
MAFSSITRALGRSPLTTELLSKLKQHSTLNLSGLSRLAKGIVASTLAQTSDRSLLIITAT
LEEAGRWSAQMDAMGWNTVHFYPTSESSPYEPFDPEAEMTWGQLQTLADLVKGSEKMAIV
ATERALQPHLPPPEAFSPYFLTLEKGKEVNLGQLGDQLAKLGYERSNLVETEGQWSRRGD
IIDVFPVAAELPVRLELFGDELDQIREFDPGTQRSLDRVTQVTLTPTSFSPIIQSALDET
VLDYLSAEDQERFAEGVSIEGIRRYLGLAFDRPASLLDYLPSDTIVAIDEPEMTHAHSDR
WIEHVEEQWQEVKPSLPKIHRNLEASLLEVEKFDRINLNELAEEKNGLNLACRPVPAIPH
QFARLAETLRGERDRNFAIWLVSAQPSRSVALLQEHDCPAQFVPNQRDFLAIDKLQVQHI
PVAVKYSGLAELEGFILPTFRLVVVTDKEFFGQQTLATPTYVRKRRRAASKQVDPNKLQP
GDYVVHKSHGIGQFIKLESLTINNETREYLVLKYADGLLRVAADQLGALSRFRGVGDAKP
ELNKMSSKAWEKTKTKVRKAVKKVAVDLLQLYAQRAQQQGYPYPSDMPWQQEMEDSFPYQ
PTPDQLKAVQDVKLDMQSDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTI
LTQQHYHTIKERFAPYPIQVGLLNRFRTPEERKDIQRRMITGELDIVVGTHQLLGKGVAF
KDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPP
PSRRPIKTHLSPYDGEMVRSAIRQELDRGGQVFYVVPRVEGIEEISARIREMIPGVRIAI
AHGQMPESELESVMLTFGAGEADVLLCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLR
GRVGRAGIQAHAWLFYPKQYQLSDAARQRLRALQEFTQLGSGYQLAVRDMEIRGVGNLLG
AEQSGQMDAIGFDLYMEMLQEAIQEIRGQEIPQVDDTQIDLSLTAFIPADYIPDLDQKMS
AYRSVAAAQSKSELVQVAADWNDWYGQIPIAAQQLLRVMELKQIAKKLGFSRIKPEGKQH
VILETPMEEPAWNLLKENLPEHLRSRFVFTSGKVTVRGLGSLSADQQLTNLIDWLSRMQG
ALPEPTLV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttcgattactcgcgctctcggtcgatcgccgctgacgactgaactcctc
agcaaacttaagcaacattcgacactgaatctatctggcttgtcgcgcttggcgaaaggg
attgtcgcttcgactttggcgcaaacgagcgatcgctctcttctgatcattaccgcaacg
ctagaagaggcgggacgctggagcgctcaaatggacgcgatgggctggaatacggtgcat
ttctatccgacttcggaatcgtcgccgtatgagccgtttgatcccgaagcggaaatgact
tggggacagttgcaaactttagcggatttggttaagggatcggagaaaatggcgatcgtg
gcaaccgaacgcgctctccagccccatttaccgccacccgaagcattttcgccttacttt
ttaaccttagagaaggggaaagaggtcaatcttggacagttgggcgatcagttagcgaaa
ttaggatatgaacgatcgaacttggttgaaaccgaagggcaatggagccgacgaggggac
attatcgatgtgtttccggttgcggcagagttacctgttcgattggaattatttggggat
gagttggatcagattcgtgagtttgatccggggacacagcgatcgctcgatcgagtcaca
caagttactttaacgccaacaagctttagtccaattattcaatctgcattagatgagacg
gttcttgactatctatcagcggaagatcaagaacgatttgcagaaggtgtatctattgaa
ggaattcgccgctatctaggattagcattcgatcgacctgcttctttattggactatcta
ccgagtgatacgatcgttgcgatcgatgagcctgaaatgactcatgcacatagcgatcgt
tggatcgaacacgtcgaagaacaatggcaagaagttaaaccaagcttgcccaagattcat
cgtaatttagaagcttcattgcttgaagttgaaaagttcgatcgcattaatctcaatgaa
ttagccgaagagaaaaacgggctgaatcttgcttgtcgtccggttccagccattccacat
cagtttgcaagattagcggaaacattgaggggagagcgcgatcgtaactttgcaatttgg
cttgtatcggcgcaaccttcccgatcggttgcattgttacaggagcatgattgtccagcg
cagtttgtaccgaatcagcgggactttttagcgatcgacaaattgcaagttcagcacatt
cccgttgcagtgaaatactctggtttagcagaactcgaaggctttatcctaccgaccttt
cgtttagttgttgttactgataaagagttcttcggacagcaaactttagctactccgact
tatgttcgcaagcgtcgaagagcagcttctaagcaagttgatccgaacaagctacagcct
ggagactatgttgttcataagagtcatggaatcgggcaatttatcaagctcgaaagctta
acgattaataatgaaactcgcgagtacttagttctaaagtatgcggatggactattgcga
gttgcagccgatcagttgggtgcattgtctcgctttcgaggtgtgggagatgcgaaacct
gaactgaataagatgtcgagtaaagcttgggagaaaaccaagactaaggttcgcaaagcc
gttaaaaaggttgccgttgatctactccaactctatgcacaacgggcacagcaacaaggc
tatccttatccgtctgatatgccttggcagcaagaaatggaagattctttcccgtatcag
cccacaccggatcaattaaaagcggtgcaagatgtgaagctcgatatgcaaagcgatcga
cctatggatcgcctcgtctgcggtgatgttggttttggtaaaaccgaagttgcgattcga
gcgattttcaaagcggtgactgctggaaaacaagttgcattactcgcaccgactacaatt
ctgactcaacagcactatcacacgatcaaagaacgctttgcaccatatccgattcaggtt
ggattgctcaatcgtttccgtactcctgaagagcgcaaagacattcagcgcagaatgatc
actggagagttagatattgttgttggaacacatcaacttttaggaaaaggcgttgcattc
aaggatctaggtttgctcgttgtagatgaagaacaacgatttggagtgaatcagaaagag
aagatcaaatcgctgaagactcaagttgatgttcttacactgagcgcaactccgattccg
agaactttgtatatggcgctttcgggagtgcgggagatgagtttgattacgactccgccg
ccttctcgtcgtccaattaagacccatttatcgccttatgatggggaaatggtgcgatcg
gcaatccgacaagaactcgatcgaggtggacaagtcttttatgtagttccgcgagttgaa
gggattgaagagatttccgctcgaattcgagaaatgatacccggagtaagaattgcgatc
gcacatggtcaaatgcccgaatccgaacttgaatcggtgatgctgacattcggtgcaggt
gaagctgatgtgctgctttgtaccacgattatcgagtcaggattagacattccgagagtg
aataccattctgatcgaagatgctcagaagtttggactatcccagctttatcagctacgc
ggtcgagttggacgagcaggaattcaagctcatgcttggttgttctatccgaagcagtat
caactatcggatgcagcgagacaacgattacgcgcattgcaagaatttacacagcttggg
tcgggctatcagttagcagttcgagacatggaaattcgtggagttggaaacttgctcggt
gcagaacaatccggacaaatggatgcgatcggctttgatctctacatggaaatgctgcaa
gaagccatccaagaaattcgaggtcaagaaattccacaagtcgatgacacccagatcgat
ctcagtctcacggcatttattccagccgattacattcctgacttggatcaaaagatgagt
gcttatcgttcagttgcggcagcacaatcaaaatcggaactggtgcaagtggcagccgat
tggaatgattggtatggacaaatcccgatcgcggctcaacagttactccgcgtcatggaa
ttgaagcagattgctaagaagcttggattttctcggattaagccagaagggaagcagcac
gtgattttagaaacgccaatggaagaacctgcttggaatctattgaaagagaatctaccg
gagcatctacgatcgcgcttcgtgttcacttctggaaaagtgacggttcgcggcttaggt
tcgctcagtgccgatcaacaattaaccaacttaatcgactggctaagcagaatgcaagga
gctttacctgaacctacattagtttaa
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integrated database retrieval system
