Leucoraja erinacea (little skate): 129698226
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Entry
129698226 CDS
T09122
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129698226 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129698226 (pcf11)
03019 Messenger RNA biogenesis [BR:
leri03019
]
129698226 (pcf11)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129698226 (pcf11)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129698226 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
129698226
NCBI-ProteinID:
XP_055493175
LinkDB
All DBs
Position
6:62429194..62460711
Genome browser
AA seq
1831 aa
AA seq
DB search
MAEDTAKADACKEYLSSLEDLTFNSKPHINNLTILAEENLKYSPEIVKLIEAQISKAPVS
EKLPVMYLMDSIVKNVGGSYITLFAQNLGVTFSSVFEKVDESTRKSLFKLRSTWDDMFQL
TKLYALDVKVNKLDPAWPIKPLPPNVNSSSIHVNPKFLNRSLEEPSTSSSAVAPVNSAKQ
NITESQKNVTQEQEQFIRQQLLAKQKQLLELQQKKLELELEQTKAQLIASLASQHPIPDS
MVTLGHAKQHVPITKVSPMLSSGAGKPTPAAVRPLQQSAQPDKFQAAHASDTKASNRDPR
INRFSQQTKDFAKKDGTLQTMKLDKTVSKQISPARGSSEKAAVSKPDKDKACDRSFRKES
KVSEGKSKVVSPVKNKSSVKNAKKVDTEKVKVEVAKRDPRLRKSSQDKTDSKVESKERRA
NTEKKVDEDQSKGTERKPSVTRNRTSSGMLGNEIERDVKPGGFNFRSHPRSSRSQSPRSR
SPKSRSPITRSRQRSRLSPKRRRISVSPLSKVQDKEKAAIRPLSDEYKQNINWEHRDLRK
KANFKLEARDSRKPKRVRDDRSQESQVARPENRNSPRSSPEPKENVENWHDPPSAKRWKS
GWEETKSLKQKQDTPAHTKYTYQKEAHPGNKGILSPRTPRQQRMSVDANLQIPKELTNAS
KRDLLKKANQRLAAAEISYDEFLVVAHQINQLFQYQEEKNRSGDWQASHVSPRSFKTELK
GDSPTRTQGKGASLSEAELSYLEHMSKLKRTRVQSEQSHDTELRWKTRENHKKDVSGDLG
VREGDQGNKSPNLSGSRHDVRGSFQERKLGEKREGGESGHHSEGRHSERRKPCDKTVRHS
PVGDNRQLHEKHCDRVSPAHQHTNPIVDERNQSNTRDSKKHIDEALPTKRSSPISEDRYK
TDSNHGMRQLELTRNEHKDQRQGARQSERDLKEFGPRERADSKREEPRQRDRRSEERPAY
DAPQRGAGLVESLRLRSGVLEVSQRLSDRSLPGKSGPVKNVDKIRTDESIEPDRTWVLGR
DGSPSCDLRITGSRIRLPDLPAPLVQPINDGPEQSGLWSEGIPGQPSKHFESLGQSGACF
DGPHRGHPAAGFDCPGNLRVGQPCVRFEGPGGPRSGLHFEISRPRQLGPHFDGPHLVQSG
PRFDGPHPGQLGPRFDGPHLGQPGVRFNGPHLGQPGARFDNAGGPLPGVHFEGPQPATRI
DGSHPGPFDNQGGHPGQPSSRFGQPTVQPGAQLDNPGAHQGHPRFDPHPGQPGMPFDVPH
PRQSCTRFDKPDGLVGHPHLRFDGPQSGQPNMRIDCPGSRLGQPITRFDGPRELGAHFDG
PGGRAAQCGVRFDGPQMGQPGAHFDGASSHPGQSAFRFDGPAGTRFDIGAQPSAYFDNSR
GPQFDGAPGHPDPRCIVTGHLFNNHPQSSQYQSRGFDGQSGPRFNMPQGSQFNESAVPGA
STLTNPTYVPTTGPCFDGQTPMSRLAGPHNNDQYDPLCGTFYNSNLSSPENLSRQLQPVN
ALAGFPCNHVSFRQGQQYLPSQSSVPVTQIQQGSSFAPLDNHLGQLDVNELFSKLISTGI
LKSTPVDSTPTQDESQASTTVEDDEEEENEENIPDLTNFKIEELKQRYDGVISRLYTGIQ
CYSCGMRFTASQTDVYADHLDWHYRMNRMEKDITKKITYRKWYYSLTDWIEYEEIADLEE
RAKSQFFEKVHEEVVQRTQEAAKEKEFQSVPAGPAGVHEICEICQEAFEQYWDEDEEEWH
LKNALRVDNTTYHPACYEDYKNASFTDSTPSPSDAPLENPLHSVIKQEQLDVSGKASDLA
NSCKSTETDASSVLTDIKTEKDTATVKMDTV
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagacacagcgaaggcggacgcgtgtaaagagtacctgtcgtcgttggaagac
ctaactttcaacagcaagcctcacatcaacaatctgaccatcctggccgaagagaacctg
aagtactcgccggaaatcgtcaagttaatcgaagcgcaaatatccaaggccccagtttca
gagaagcttcccgtaatgtacctcatggattccattgtgaagaatgttggaggaagctat
atcacactctttgctcaaaacttaggtgttacattttctagtgtttttgaaaaggtggat
gagagcactagaaaaagtttgtttaaattgcgctctacatgggatgatatgtttcaactg
acgaaactttatgccttagacgtcaaagtcaacaaactagatcctgcatggcctattaag
ccgttaccaccaaatgtgaacagttcaagtattcatgtaaatcccaagtttttaaataga
tcgcttgaagaacccagcacctcaagctctgcagttgctcctgttaactcagccaaacaa
aacattactgagtcacagaaaaacgtaacacaggagcaagagcagtttataagacaacaa
ctgttagcaaaacaaaagcagttacttgagttacaacagaagaagttggagctggaatta
gaacagacaaaagcacagctgattgcttcacttgcttcccaacatcccattcctgattca
atggtaactcttggacatgccaaacaacatgtgccaattacaaaagtttctcccatgctc
tcatcaggggctggaaagccaacgccagctgcagtcagacccttgcaacaatcggctcag
ccagataaatttcaggcagcacatgccagtgataccaaagcatcaaatagagatcctcgc
ataaataggttcagtcaacagacaaaagattttgctaagaaggatggaacattgcaaaca
atgaaactggacaaaactgtaagcaagcaaattagcccagctaggggatcctctgagaag
gcagcagtatcaaaaccagacaaagataaggcctgtgacagatcgttccgaaaggagtct
aaagtgtcggagggtaaatctaaagtggtttcaccagtgaaaaataagtcatctgttaaa
aatgcgaaaaaagtggacactgagaaggtaaaagtagaagttgcaaagagagatccaagg
ttgcgaaagtcttctcaagataagactgatagcaaagtcgaatcaaaagaaaggagggca
aatacagaaaaaaaggtagatgaagatcagagtaaaggaactgaacgtaagccttcagtt
acaagaaacagaacaagcagtggcatgctgggaaatgaaattgaaagagatgttaaacct
ggaggatttaatttcagatcacatcctagatcatcaagatcacagtccccaagatcgcga
tcaccaaaatcacggtcacctataacacgttcaagacaacgaagcagactgtcacccaaa
aggagacgtataagtgtttcaccgctttccaaagtgcaggacaaagaaaaggcagcaata
agacccttatctgacgagtataaacaaaatattaactgggaacatcgagatcttagaaag
aaagcaaacttcaaactagaagcaagagattcaaggaaacccaagagggtgcgagatgac
agaagtcaggaatcgcaagtggcacgtcctgaaaacagaaattctcccagaagctcccct
gagccaaaagagaatgttgaaaactggcatgaccctccatctgccaaaaggtggaagtct
ggctgggaggaaactaaaagcttgaagcaaaaacaggatactccagcacatacgaaatat
acataccagaaggaagcccatcctggaaataaaggaattctgtctcctcgaacaccacga
cagcaaagaatgagtgttgatgcaaacttgcaaatccccaaagaattgacgaatgctagc
aagagagatttgttgaaaaaagcaaatcaacgactagcggctgcagaaataagttacgat
gagtttttggtggttgctcatcaaatcaatcaattgttccaataccaagaggaaaagaat
aggtctggcgattggcaagcatcccacgtttctcctaggagtttcaaaactgaactgaag
ggagattctccaactagaacccaaggtaaaggcgcatctttatctgaagcagaactgagc
taccttgagcatatgtctaaattaaaaagaaccagggttcaatcagaacaatcgcatgat
acagaacttcgctggaaaacaagagagaatcataagaaggatgtatctggcgatcttggt
gtaagagaaggtgatcaaggaaacaaatccccaaatctgagcggcagcaggcatgacgtg
agaggttcttttcaggaaaggaaacttggagaaaaaagagagggaggtgagagtgggcat
cacagtgaaggaaggcattcagaaagaagaaaaccttgtgataaaactgtgagacattct
cctgttggtgataatagacagttgcatgagaaacattgtgatcgtgtgtccccagcacat
cagcatacgaaccctatagtagatgagcgaaaccaaagtaacacacgtgatagcaaaaaa
cacatagacgaagcattgccaactaaaagaagttcaccaatttctgaagatcgatacaaa
acagattctaatcatggaatgagacaactagagctgacaagaaatgaacataaagatcag
cggcaaggggcacgtcaatctgaaagagatctgaaagaatttggtccaagagagagagca
gactcaaaaagagaagagccaaggcagcgtgaccgtcgttcagaagaaagaccggcttat
gatgcaccacagaggggtgctggcctagttgaaagtttgcgtctgagatctggtgtactt
gaagtttcacagagattaagtgacagatcactgccaggaaaatctggacctgtaaagaat
gtggataaaataagaactgatgaatccattgaaccagataggacatgggttcttggtcgg
gatggatctccaagctgtgacttgcgcattactggatctaggataagattgccggatctc
cctgcaccacttgtccagcctattaatgatggccctgagcagtctggtctttggagtgaa
ggtattccaggtcaaccaagtaaacattttgaaagtcttgggcagtctggagcctgtttt
gatggtccacacagagggcaccctgctgcaggctttgattgtccaggtaacctgcgtgta
ggacagccctgtgtgcgatttgaaggtccaggtggcccacgttctgggctgcactttgag
atttcgcgcccaaggcaacttgggccacatttcgatggccctcatctggtacagtctgga
ccacgttttgatggtcctcaccctgggcaacttggcccacgctttgatggcccacacctc
ggtcagcctggagtgcgttttaatggtccccatctcgggcagcccggggcacggtttgac
aatgctggtggtccactgcctggtgtgcacttcgagggtccacagcctgctacccgcatt
gatggttcgcatcctggtccctttgacaatcaaggtggtcacccaggccagccaagctca
cgttttgggcagcccacagtacagcccggtgctcaattggacaatcctggagctcatcaa
gggcaccctcgctttgatccacatcctgggcaacctggcatgccttttgatgtcccacat
ccacgacagtcctgcacgcgctttgataaacctgatggtcttgtaggacatccccatttg
cgttttgatggtccacagtctgggcaacccaatatgcgcattgattgtccaggatcacgt
ctcgggcagcctattacccgctttgatggtccacgagaacttggtgcacattttgatggt
cctggtggtcgtgcagcacagtgtggtgtgcgctttgatggcccacaaatgggacagcct
ggtgcacacttcgatggagcaagcagtcacccaggccaatctgcttttcgttttgatggt
cctgcaggaactcggtttgacattggtgcccagccaagtgcatattttgacaattctcgt
gggccacaatttgatggggctcctgggcatccagatcctagatgcattgtcactggtcat
ttatttaacaatcatcctcaaagctcacaatatcagtcaagaggatttgatggacaatct
ggaccaagatttaatatgcctcaaggatcacaatttaatgaatcagctgtacctggagcc
tcaactttgaccaatccaacctatgtgccaacaactggtccttgcttcgatggccagaca
ccaatgtctcgattggcaggaccacataataatgaccaatatgatccgctgtgtggaaca
ttttataacagtaacctttcatcacctgaaaacctgtctcgtcaactacagcctgttaat
gccctggctggttttccctgcaatcacgtttcttttcgtcaagggcaacagtatctgcca
tctcaatcttctgttcctgttacacagattcagcaaggatcatcctttgcgcctttggat
aatcatttggggcagctggatgtgaatgagctgttttcaaagctgatttccacaggaatt
ctgaagtcaactcctgtggattccaccccaacacaagatgaatcccaggcttccactaca
gttgaagatgatgaggaagaagaaaatgaggaaaacattccagatcttaccaactttaag
attgaggaactaaagcagagatatgatggtgttatcagccgcctgtacacaggcattcag
tgctattcttgtggaatgcgattcacagcatcgcaaaccgatgtttatgcagaccatttg
gactggcattaccgaatgaacagaatggaaaaggacataactaagaaaattacttacaga
aagtggtactacagtttaacggactggatagaatatgaagaaattgctgacttggaagaa
cgtgctaaaagtcaattctttgagaaggtccatgaagaggttgtgcaaagaacgcaagaa
gctgcaaaagaaaaggaatttcaaagtgtacctgctggacctgcaggagtgcatgagatc
tgtgaaatctgtcaagaggctttcgagcagtattgggatgaagatgaagaagagtggcat
ctgaaaaatgcacttcgtgtggataatacaacctatcatccagcatgttatgaagattat
aaaaatgcttcatttacagattcaactccatctccaagtgacgctcctttggaaaatcca
ttacattcagttattaaacaggaacagttggatgttagtggcaaggcatctgatcttgcc
aacagctgtaaaagtactgagactgatgccagcagtgtgttaacggacattaaaactgaa
aaagatactgcaactgtgaaaatggatacagtctaa
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integrated database retrieval system
