Leucoraja erinacea (little skate): 129700612
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Entry
129700612 CDS
T09122
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03030
DNA replication
leri03410
Base excision repair
leri03420
Nucleotide excision repair
leri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129700612 (lig1)
03410 Base excision repair
129700612 (lig1)
03420 Nucleotide excision repair
129700612 (lig1)
03430 Mismatch repair
129700612 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
leri03032
]
129700612 (lig1)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129700612 (lig1)
Enzymes [BR:
leri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129700612 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
129700612 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129700612 (lig1)
DNA replication proteins [BR:
leri03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129700612 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129700612 (lig1)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129700612 (lig1)
NER (nucleotide excision repair)
Other NER factors
129700612 (lig1)
MMR (mismatch excision repair)
Other MMR factors
129700612 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
129700612
NCBI-ProteinID:
XP_055497205
LinkDB
All DBs
Position
9:complement(70807219..70829490)
Genome browser
AA seq
552 aa
AA seq
DB search
MIEVIRWRGVKQGAGAGRPSLVGESSRSTQRRVFTPXPLSAFTVYQRLMDIAQLVGSSSM
TKKMDVIKGLLVARRLSEARYLIRSLGGKLRIGLAEQSVLSALALAVCLTDTRHGSVDGM
SGEKRKAWIDEQTHTLKQTYCELPDFGVIIPLILEKGIAELPQHCRLTPGGNPPLPPRCX
PTPTRGVGEVMRRFTGATFICEYKYDGERAQIHVLESGDVHIYSRNQENNTTKYPDIISR
VSKVCKAHVRSCVLDTEAVAWDRDKRQIQPFQVLTTRKRKDVAAADITVQVCVYAFDLLY
LNGESLVKEPFSRRRQLLRESFEEIEGEFVFAESMIGNNTEDIAEFLEQSIKDSCEGLMV
KTLDVDATYEIAKRSHNWLKLKKDYLDGVGDSLDLVVIGGYHGRGKRTGVYGGFLLACYH
PDLEEFHTVCKIGTGFKDEELGQHANFFKAHVLDCPRPYYCWDSSAEPDVWFDAVQVWEV
KCADLSVSPIYKAALGMVEEGRGISLRFPRFLRVREDKQPEEATSSSQIADLYQKQQQIQ
NQQVPVLRDDSD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgattgaggtaatcaggtggagaggggtgaaacagggtgcaggagcggggagaccctcc
ctggtgggtgagtcgagccgatccactcagcggagggtcttcactcccnctcccctgtcg
gccttcaccgtctaccaacggctgatggacatcgcacagctagtgggcagcagctccatg
accaagaagatggatgtgatcaagggattgttggtggcccgtcggctctccgaggctcga
tacctcatccgctctttaggaggtaagttacggatcggtttggctgagcagtccgtcctg
tctgcgctggccctggccgtctgtctgaccgacaccagacatgggagtgtggacgggatg
agcggggagaaacgcaaggcctggattgatgagcaaactcacaccctcaaacagacgtac
tgtgagctgccggacttcggtgtgatcattcccctaatactggagaaaggaatcgctgag
ttaccccaacactgtcgcctcacaccagggggcaacccccccctgcccccccgatgctag
cccacccccacgcggggagtgggggaggtgatgagacgtttcactggggccaccttcatc
tgtgaatacaagtacgacggagagagagcccagatccacgtgttggagtcgggcgacgtt
cacatctacagtcgcaaccaggagaacaacacgacaaagtaccccgacatcatcagcagg
gtcagcaaggtgtgtaaggcccacgttcgctcctgtgtgctggacactgaggccgtggcc
tgggacagagacaagagacagattcaacccttccaggtcctgaccacccgcaagaggaag
gatgttgctgctgctgacatcacggtgcaggtttgcgtttatgcctttgatctgctctac
ctcaacggagagtccctggtgaaggaacctttctccagacgccgccagttattgcgagag
tcgtttgaggagattgagggagagtttgtatttgccgagtcgatgatcgggaataacacc
gaggatattgctgagttcctcgaacaatccatcaaagactcatgtgagggtctcatggtg
aagactttggacgttgatgcaacctatgagatcgccaaacgttcccacaactggctgaag
ctgaagaaggactacctggatggagttggggattcactggacctggtggttattggagga
tatcacgggcgggggaagagaacgggcgtctatgggggattcctgctggcttgttaccac
cccgacctcgaggagttccacactgtgtgtaagattgggaccggattcaaagacgaggaa
ctcggacaacatgccaacttcttcaaggcccacgtgttagactgcccgcgaccatattac
tgctgggacagttcggcggagccggatgtgtggtttgatgcagttcaggtgtgggaggtg
aagtgtgccgatctctctgtctcccccatctacaaagctgctctagggatggtggaggag
gggagggggatctctctccgtttccctcggttcctgagggtccgtgaggacaaacagccg
gaagaggcaacgtccagctcgcagattgccgacctctatcagaagcaacaacagattcag
aaccagcaggtcccagtgttgagggacgactcggactga
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