Leucoraja erinacea (little skate): 129709402
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Entry
129709402 CDS
T09122
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
129709402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
leri03000
]
129709402
04121 Ubiquitin system [BR:
leri04121
]
129709402
03036 Chromosome and associated proteins [BR:
leri03036
]
129709402
Enzymes [BR:
leri01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
129709402
Transcription factors [BR:
leri03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
129709402
Ubiquitin system [BR:
leri04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
129709402
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
129709402
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
129709402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
JmjC
Cupin_8
Motif
Other DBs
NCBI-GeneID:
129709402
NCBI-ProteinID:
XP_055511707
LinkDB
All DBs
Position
25:13040879..13231262
Genome browser
AA seq
1266 aa
AA seq
DB search
MDVEKESGRRLRTFCRRRYDNEDLSDDDIASMRTFDVEEKLSSDSYNSSYVHFMKGKDFT
LEYVQRETIKVPIIFRDKDGLGIKTPETDFSIRDVKLFVGSRRIVDVMDVNTQKGIEMSM
SQWVKYYETPEVEREKLYNVISLEFSHTKLENLVKRPDVVDLVDWVDNMWPRHLKEKQLD
STNAIAEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHILRGGKVFWLVPPTSHNLEI
YEEWVLSGKQGDIFLGDRVDGCQRIELKQGYTFLIPSGWIHAVYTPVDTLVFGGNFLHSF
NIPMQLYIYGIEDRTRVNAKFRYPFYYEMCWYVLERYVFCLTKRSHLTKQYQRESMLIDT
EKKPNTESPSSDSRLDMDEESSDIHVKEEKDETKDKMSTQNAKGLGDDLPSPESAHSEGN
ESTGKTQKLTRHLKRTLSNDSNDSTKSPMLTDCPKTPSGSPDPSQPVSEGSNKWIHLTEF
ELKGLKALVEKLESLPENKKCVPEGIEDPYALLEDMKTVLEEHAEDDQKLAITGVPIVTW
PKKTVKHRTVGRPKGKLGTSAAVKLAANRATAGARRRRTRCRKCEACLRTECGECHFCKD
MKKFGGPGRMKQSCILRQCIAPVLPHTAVCLICGEAGKEDTVEEEEAKFNFMLMECSICN
EIVHPGCLKLQDGDGVVNEELPNCWECPKCNHEGKTGKVYKQKRGPGFKYASNLPGSLLK
EQRPNKEHKDNMETVKKKGDREENSKRKSEEHSKKRCDDSFPKRKSEDGLIMRKRRIVDK
TSDPVIRKKFKIGREEKLLRRKKRSLHPNEDRQTPVKLLRNIKQEPEDEPPETPQKTKES
DQSRSSSPRAGPSTESAESKEKKSERFKEKRKKRLHNKELSKELSKELNQEIHKTESCLA
NENHQPIKTEGDGEKVEKPKRLLASCDRLHKLNGTPRFRHQLTTSLRRAPRVITRPPPSV
SPTKSIQMERHVVRPPPVSPPPDSLPLDDGEDHVMQREVWMAVFGYLSRKDLCVCMRVCK
TWNRWCCDKRLWTKIDLGRCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLTWLINRLPG
LKDLIVSGCSWAAISALCSSSCPLLRTIDLRWVEGLKDAQMRDMLSPPTDNRPGQIDNRS
KLRNVTDLHLAGLDITDATLRLIIRHMPMLSRLDLSYCNHLTDQSINLLTAVGTTTRDSL
TEINLSVCNKVTDQCLTYFKRCGNICRIDLRYCKQVTKEGCEQFIAEMSVSVQFNLSEEK
LLQKLS
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagagaaagagtctggacgaagattgcgcacattttgtagaaggcggtatgac
aatgaggacctctcagacgatgacatagccagcatgaggacttttgatgtggaggaaaag
cttagtagtgactcatacaattcaagttacgtgcactttatgaaaggaaaagattttacc
cttgaatatgtgcagagagagactatcaaggtccccattatcttcagggacaaagatggt
ctaggaatcaaaaccccagaaaccgatttcagtattagggatgtaaaactcttcgttggg
agtcgtcgtatcgtcgatgtcatggatgtgaatacacagaaggggattgaaatgagcatg
tcacagtgggtcaaatactacgaaacaccagaggttgaaagggagaagctctacaatgtc
atcagcctggaattcagtcacacaaaacttgagaacctggtaaaacggcctgatgtggtg
gacttggtagactgggtggataatatgtggccacggcacttaaaagaaaagcagctggac
tccacaaatgcgattgcagaaatgaaatatcccaaagttcagaagtactgcttaatgagc
gtcaaaggttgctacaccgattttcacattgattttggtggcacttcagtctggtaccac
attcttcgaggagggaaggtgttctggttagtcccacccacatcgcacaatctggagatt
tatgaagagtgggttctttcaggaaagcaaggtgatattttccttggggacagagtggat
ggatgtcagcgaattgagttaaaacaaggatatacctttctgatcccttcaggatggatc
catgcagtgtacacacctgtagacacattggtttttggtggaaatttcctgcacagcttt
aatattcccatgcagctttatatttatgggattgaggatcgaactcgggttaatgccaag
ttccgttatcctttctactatgaaatgtgctggtatgttctggaaagatatgtgttctgt
ttgacaaaacggtctcatctcaccaaacagtaccagagggaatcaatgttaattgataca
gagaagaaaccaaataccgagagcccttcatcagattcccgactcgacatggatgaagaa
tcttctgatatacatgtcaaggaggagaaagatgagacaaaagataaaatgagcacacaa
aacgcaaaaggattaggtgatgatttgccttctccagagagtgcacattcagaaggaaat
gaaagcactggaaagacacagaaattgacgaggcatttaaagaggactttatccaatgat
tcaaatgatagtacaaagtcaccaatgctaacagactgtccaaagaccccaagtggatct
cctgacccttctcagccagtatctgaggggtcgaacaaatggattcaccttacagagttc
gaactgaaagggttaaaggcacttgtggaaaaactagagtccttaccagagaataagaaa
tgtgtccctgaagggattgaagatccttatgcccttctggaagatatgaagactgtactg
gaggaacatgctgaagatgatcagaaattagctatcactggggtccccattgtaacatgg
ccaaaaaagacagtgaagcaccggacagtaggacgaccaaaaggaaagcttggaacgtct
gccgcggtgaagcttgcggctaacagagccaccgctggagcacgcagaaggagaacaaga
tgtcggaagtgcgaggcatgtctcaggaccgaatgtggagaatgccatttctgcaaggat
atgaagaaatttggaggaccagggagaatgaagcagtcctgtatcctgagacaatgcatt
gcaccggtcctgccacacacagctgtctgtctcatctgtggagaagcaggaaaagaggac
actgtggaagaagaggaggcaaaattcaatttcatgctgatggaatgctcaatttgtaat
gaaattgtgcatcctggctgcttaaagttacaggatggagatggagttgtcaatgaagag
ctgccaaactgctgggaatgtcctaagtgcaaccatgagggtaaaacagggaaagtctat
aagcagaaaagagggccaggatttaagtatgcctccaacctcccaggttcgctattaaaa
gaacagaggccgaacaaagagcacaaagacaacatggaaactgtcaagaaaaagggtgac
cgagaggaaaattccaaacggaaatcggaggaacattccaagaaacgatgtgatgactct
tttcccaagaggaaatctgaagatggacttatcatgcggaagcgacgaattgttgataaa
acatcagacccagttatcagaaaaaagtttaagattggaagggaagaaaagctcttgagg
agaaagaaaagatccttgcatccaaatgaagatcgtcaaacgcctgtgaaattgctgcga
aatatcaagcaagaaccagaggacgaaccacccgagactcctcagaagacaaaggaaagt
gaccagtccaggtcgagctctccaagagctggtccgagcactgaaagtgcagaatccaag
gagaagaagagcgagagatttaaagagaaacgtaaaaaacgattgcacaacaaagaactt
agtaaagaattgagcaaagaactcaatcaggaaattcataagactgagagctgcttagca
aatgagaatcaccaaccgattaaaacggaaggagacggtgaaaaagtagaaaagccgaaa
cgacttctggcaagctgcgaccggctgcacaagttgaacggaactccgaggtttagacac
cagcttacgacgagtttgaggcgggctcccagggttattaccaggccacccccttcagtg
tcaccaacgaaatccattcaaatggagcgacatgtggtacgccctccacccgtcagccct
cccccagactcactgcccctcgatgacggcgaagaccatgtgatgcaaagggaggtgtgg
atggctgtgttcggctatctcagtcgcaaggatttgtgcgtttgcatgagagtctgcaaa
acctggaacagatggtgttgtgacaagaggctgtggaccaagattgacttgggccgatgt
aagtcgatcacaccgctgatgctgagtggaataattcgaaggcaacctgtaacacttgac
ctgagctggacaaatatatcaaagaaacagctaacttggctaatcaacaggctgccaggt
cttaaggacttgattgtttccggctgttcctgggcagcaatatcggcactttgtagttcc
agttgccccttgctcagaaccattgatctcagatgggtggaaggattaaaagacgctcaa
atgagagatatgctgtcacctccaactgacaacagaccaggccagattgacaatcgcagc
aaattacgtaatgtgacagatcttcacttggctggcctggatatcacagatgcaacactc
cggcttattattaggcacatgccgatgctttctagactagatcttagttactgtaaccat
ctgacagaccagtcaattaatcttttaacagcagttggtacaacaacaagagactcacta
acagaaatcaatctatcagtttgcaataaagtcactgaccagtgcctaacctatttcaaa
cgctgtggcaacatctgccgaatagatctccgttactgcaagcaggtaacaaaagaaggt
tgcgaacaattcatagcagagatgtctgttagcgttcagttcaatttgtcagaggagaaa
ctgttacagaaacttagttaa
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integrated database retrieval system
