Leucoraja erinacea (little skate): 129711591
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Entry
129711591 CDS
T09122
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5-like isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
leri
Leucoraja erinacea (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
leri03036
]
129711591
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
129711591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
zf-HC5HC2H
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129711591
NCBI-ProteinID:
XP_055515301
LinkDB
All DBs
Position
30:complement(7145210..7215460)
Genome browser
AA seq
1871 aa
AA seq
DB search
MMPASFGNEEDGMENDEGAPEEEEEEEEEEEESREPMFPDEEPAKVKKKRKPRKQKENKT
PKMKKRKKEEQKSSTYLMDDWGLEDVDYEFSEEDYHTLTNYKTFSQFLRPLIAKKNPKIP
MSKMMTVLGAKWREFSANNPFKGTSVAAAEVAAAAVAAVVEQVIVAPSVPIQVPPPIQPP
IPLRKAKTKEGKGPGVRKKSKSARAAELKKKGKGKKMVPLKIKLGGFSGKRKKESSSDED
DHGESDLDSASIHSCSVRSEGSAGLGKRRRKGGKRKKKLEEGDGYETDHQDYCEVCQQGG
EIILCDTCPRAYHLVCLDPEMEKAPEGRWSCLHCEKEGIQWEAKEEEEDEDEEEVVDEED
DDHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICPRCLCIPLKGKVQRI
LHWSWGSPPPPRTPPSTLADGGNDVDHPKALEGRPEREFFVKWVGRSYWHCSWATELQLE
MYHTVMFRNFQRKNDMDEPPPYDYGSGDDEKSEKRKSKDPQFAAMEARFYRYGIKPEWLV
VQRFINHSFDKKGDLHYLIKWRDLPYDQATWEFEDFDIPDYDSMKEMYWNHRQLIMGDDI
RPVRKLNKKGQKAEELIFDPPPCQPVVDPMVKFDKQMDYIDATGGTLHPYQLEGLNWLRF
SWAQGTDTILADEMGLGKTVQTIVFLYSLFKEGHSKGPFLVSAPLSTIINWEREFKIWAP
YFYVLTYTGDKDCRAVIRENEFCFDENFFKSGKKTFRMKSDAQIKFHVLLTSYEMITIDQ
TILGSIDWACLVVDEAHRLKNNQSKYFRVLNAYKIDYKLLLTGTPLQNNLEELFHLLNFL
TPVRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKDMPSKTELIVRVELS
SMQKKYYKFILTKNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMEAPVLPNGS
YDGNSLVKSSGKLILLQKMLKKLHSQGHRVLIFSQMTKMLDLLEDFLEYDGYKYERIDGS
ITGNQRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSR
AHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKSGSMSKQELDDIL
KFGTEELFKDDEAEKEAEEMRMIHYDDRAISKLLDRNQNATDDADIQNMNEYLSSFKVAQ
YVVREEEEQEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYN
DASQEDQEWQDDLSDNQSEYSVGSEDEDEDFEEKLEAGRRQSRRQLKNERDKPLPPLLAR
VGGNIEVLGFNARQRKAFVNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRH
LCEPGADGSETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEYINGRYSTPDMVPERM
ESKKPVDCISSDSSTPVAASPACPTAGVPAHSSTEKNGCCAEMMDDGEREKEETEVPSGE
RAVPAGEDPQEAESKKQLSEAGAEERGELELLEQAAPPQPKAAEDTTEDKEVAESLQNGE
LAKEVKEEEARKDQSGKGKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYW
LLAGIVAHGYARWQDIQNDPRYTIINEPFKAEMNKGNFLEMKNKFLARRFKLLEQALVIE
EQLRRAAYLNMTQDPNHPAMALNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQ
LEELLSDMKADVTRLPNMLSRVPPVAARLQMSERSILSQLANRGTEPQQQPFPQGQYGAA
QMYSNNFGPSFRGPGTGALVNYNQMPLGPYISATTNISAVSVQDKRHLSEGLKELEGERK
DKVSDVICIED
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atgatgccggcatcttttggcaatgaggaggacgggatggaaaacgatgagggagctcca
gaggaagaggaggaagaggaagaggaggaagaggaaagtcgcgaaccgatgtttcccgat
gaagagccggccaaagtgaagaagaaaagaaaacctcggaaacagaaagagaacaagact
ccgaaaatgaagaagagaaagaaagaggagcagaaatcatctacgtacttaatggatgac
tggggtttggaggatgtggactatgagttctcggaggaggattaccacacactgaccaac
tataaaaccttcagccagttcctgaggccactcattgccaagaaaaatcccaaaatcccc
atgtcaaaaatgatgaccgtgcttggtgcaaaatggcgggagttcagcgccaacaaccca
ttcaaagggacgtcggtggcggcggcagaggtggcagcggctgcggtggcagctgtagtg
gaacaggtgatcgtggctccatccgtgcccatccaggtgccacccccaatccagcccccc
atccctctgaggaaagccaagaccaaagaaggcaaaggcccgggggtgcggaagaaaagc
aaaagtgctcgggctgcagaactgaagaagaaaggaaagggcaagaagatggtgcccctg
aaaatcaaacttggaggattcagtggcaaacggaaaaaagaatcttcgagtgatgaagat
gaccatggtgaatctgacctggacagtgccagcatccacagctgctcggtgcgatccgag
ggatcggccggtttgggcaaaaggaggaggaaaggtggcaagcgaaagaagaaattggaa
gaaggcgatggctatgagacggatcaccaggattactgtgaggtttgccagcaaggaggg
gaaattattttgtgcgacacgtgtccgagagcttatcatttagtctgcctggaccctgaa
atggagaaggcaccggaagggaggtggagttgtctgcactgtgaaaaagaaggaatccaa
tgggaggccaaagaggaggaagaggatgaagacgaggaagaggttgtggatgaagaggat
gatgatcacatggagttctgtcgcgtctgcaaggatgggggggagctgctgtgttgtgac
tcttgtccgtcctcgtatcacattcactgccttaaccccccgctacccgagatcccaaac
ggagagtggatttgtccacgttgcctgtgtatccccctgaagggcaaagtgcagcgaatc
ttgcactggtcgtggggttctccaccaccgccccgcacaccgccatccactctcgccgat
ggagggaacgatgttgaccatcccaaggccctggaaggtcgaccagagcgggagttcttt
gtcaagtgggtggggcgatcctattggcactgctcctgggccacagaattgcagctggag
atgtaccacacggtgatgttccggaacttccaacggaagaatgacatggatgagccgccg
ccgtatgattacggctctggggacgacgagaagagcgagaagcggaagagtaaagatcca
cagttcgcggcgatggaggcgaggttctaccgatacggcatcaaacccgagtggctggtc
gttcaacgattcatcaatcacagctttgacaagaagggtgacttgcactatttgattaaa
tggagggatttgccgtatgatcaggccacctgggaatttgaagattttgacattccagat
tatgattccatgaaggagatgtattggaatcacaggcagttgattatgggggacgacata
cgaccagtgaggaagctgaacaagaaagggcagaaagctgaggagctgatcttcgacccg
cccccctgccaacctgtggtggatccgatggtgaagttcgacaagcagatggattacatt
gatgccaccggaggcaccttacacccgtaccagctggaggggctgaactggctgcgcttc
tcctgggcacagggcaccgacaccatcctggccgacgaaatgggactggggaaaactgtg
caaactatcgtcttcctgtactcgctcttcaaagagggtcactccaaggggccgttcctg
gtgagcgctccgttgtcgacgattatcaattgggagcgggagttcaagatttgggcaccg
tacttctacgtgttaacgtacacgggagacaaggactgccgcgccgtcatccgggagaac
gaattctgctttgatgagaatttcttcaagagtgggaaaaaaaccttcaggatgaagagc
gacgcacagatcaagtttcacgttctgctcacctcgtacgagatgatcaccattgaccag
accatcctcggctccatcgactgggcgtgcctcgtggtcgacgaggctcaccggctgaag
aacaaccagtccaagtatttcagggtgctcaatgcttacaagatcgattacaagctgctg
ttgacgggaacgcctctgcagaacaacctggaggaactcttccaccttctgaacttcctc
actcccgtgcgcttcaataatctggaaggattcttggaggagtttgcagacatctcgaaa
gaggatcagatcaagaagcttcacgacctcctgggcccgcacatgctgaggcgactcaag
gccgatgtcttcaaggacatgccgtcaaagacggagctgatagtccgtgtggagctgagt
tccatgcagaagaagtattacaagttcattttgaccaaaaactttgaggctctgaattcg
aaaggtggtgggaaccaggtgtctttgttgaacatcatgatggacctgaagaagtgttgt
aaccatccctacctcttcccagtggctgctatggaagctccggtgttgcccaatggatca
tacgacgggaactcgctggtgaagtcttcggggaagctgatcctcctgcagaagatgctg
aagaagctgcacagccaaggccaccgagtgctgatcttctcccagatgacgaaaatgctc
gacctgttggaggatttcctggagtacgacggttacaagtacgagcggatcgacggcagc
atcaccggcaaccagcggcaggaggccatcgaccgcttcaacgcccctggagctcagcag
ttctgcttcctactgtccacgcgagctgggggtctgggcattaacttggccacagctgac
accgtggtgatctatgactcggactggaacccccacaacgacattcaggcgttcagcaga
gctcatcgcatcgggcagaacaaaaaggtgatgatctatcgttttgtgacccgggcctcg
gtggaggaacgtatcacgcaggtggccaagaagaagatgatgttgactcacctggtagtg
cggccggggctgggctccaagtcgggctcaatgtccaagcaagagttggacgatatcctc
aagttcggcaccgaggagctcttcaaagatgacgaagcagagaaggaggcggaggagatg
cggatgatccactacgatgaccgtgccatctccaagctgctggaccgcaaccagaatgcc
acagatgatgctgacattcagaacatgaatgagtatctcagttccttcaaagtagctcag
tacgtggtgcgggaggaggaagaacaggaggaagttgaaagagagatcattaagcaggaa
gagaatgtggaccctgactactgggagaagctgctgaggcatcactatgagcaacagcaa
gaggacctggccaggaacctgggcaaaggcaaacgcattcgcaagcaggtcaactacaat
gatgcctcccaagaggaccaagagtggcaggatgacttgtcagacaaccagtccgagtac
tctgtgggctcagaggatgaggatgaagactttgaagagaagttggaagctgggagacgc
caatcccggaggcaacttaagaacgagcgagacaaacctctcccaccgttactggctcga
gttggtggcaacattgaggtccttgggttcaatgcacggcagcggaaagcctttgtgaac
gccatcatgcgctgggggatgcctccacaagacgctttcaactcccactggctggtgcgt
gatctccgcgggaagagtgagaaggagttccgggcctacgtctcgctgttcatgaggcac
ttgtgtgagccaggggcggatggatcggagacatttgcagatggcgttccccgtgagggg
ttgtcccggcaacacgtgctcaccaggataggcgtgatgtcactggtcaggaagaaggtg
caggagtttgaatacatcaacgggaggtacagcacgcccgacatggtgccggagagaatg
gagagcaagaagcccgtggactgcatctcctccgattccagcacgcccgtggctgccagc
cctgcctgcccaactgctggggtgccagcccattcctctaccgagaagaacggctgctgt
gcggagatgatggatgatggcgagagggagaaggaagagactgaggttcccagtggagag
agagctgttccagccggtgaggacccgcaggaagcggagagcaagaagcaattgagcgaa
gccggagcagaggagaggggcgagttggagctgctggaacaggcggcaccgccacagccc
aaagcagccgaggacacgactgaggacaaagaggtcgcagagagtctgcagaacggagaa
ctggcaaaggaggtgaaggaggaagaggccaggaaggatcagtctggcaaagggaagttt
atgttcaacatcgctgacgggggtttcacagaactgcacacgctttggcagaatgaagag
cgagctgccgtctcttccggaaagatctacgatatctggcacaggaggcacgactactgg
ctgctggctggcatcgttgcccatgggtacgctcggtggcaggacatccaaaacgacccc
agatacaccatcatcaatgaacctttcaaggccgagatgaacaagggcaacttcctggaa
atgaagaacaaattcctcgccaggaggttcaagctcctggagcaggccctggtgatcgaa
gagcaactgcggagagctgcgtacctcaacatgacccaggaccccaaccatcccgccatg
gctctcaacgcccgctttgccgaggtggaatgcttggccgagagtcaccagcacctctcc
aaggagtctctggccggcaacaagcccgccaatgccgtgctgcacaaagtcctgaatcag
ctggaggagctgctgagtgacatgaaggcagacgtgaccaggttgcccaacatgttgtcg
cgggtcccgccggtcgctgcgaggctacagatgtccgagcgaagcatcctaagtcaactt
gccaaccggggcaccgagccccagcagcagccgttcccacagggccagtacggagcagca
cagatgtacagtaacaactttgggcccagcttccgggggccgggcacaggagcactcgtc
aactacaaccagatgccactgggtccctacatcagtgcaaccacaaatatttctgctgtg
agtgtacaggataaaaggcacttgtcagaaggattgaaagaactggaaggagaaaggaaa
gataaagtcagtgatgtaatctgcatcgaagattga
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