Leucobacter muris: Leucomu_04720
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Entry
Leucomu_04720 CDS
T05802
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
leu
Leucobacter muris
Pathway
leu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Leucomu_04720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leu03400
]
Leucomu_04720 (mfd)
Enzymes [BR:
leu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Leucomu_04720 (mfd)
DNA repair and recombination proteins [BR:
leu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Leucomu_04720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QAB17320
UniProt:
A0A410H9K0
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All DBs
Position
1005062..1008757
Genome browser
AA seq
1231 aa
AA seq
DB search
MTLRGIDRLLEASPSFARALDAADGSVATDADFSVAEGLRAPLIAGLLRRRREAGDHGAL
LVIAATSREADALRSALASLVPEAVTAEFPAWETLPHERLSPSAETVGRRAAALRLLREH
TASQPLVLVASVRAALQPVSPHAAQAEPLVLRPGEQPAASGSPGRGLDLVARELVLRAYT
RVDMVTRRGEFAVRGGILDVFPPTAEQALRVDFFGDEVDQIRRFAVSDQRSAGDPVPELE
LWPARELLLTDDVRERAAQLLPRFPALSSLLEKMSQGIPVEGMESLLPQLVPGVAPLTAL
LPQGGAVVVASPERVAGRAVSLAETNREFLEAAWSAATAGADAPVPTEDSGMLSVSELRA
ASRGRPWWTVSTFVAGDGDPTDEPASPTEPVEGGAGPHPEADHINVAGGPFPRPAAGADA
TSAAIRLFSERLREGWRVVVTAQGVGLVERARDVLVEAGAAARMVDELPERLEPGVVYLV
AGTAWSGFASDEAALLLASEAEFFGRSVGSQAASGQKLARRRGKNVVDPLKLVAGDYVVH
ETHGIGRFVELTQRLVPTGIGRDAAKALREYLVLEYASTKRGMPKDKLYVPTDQLDQLSR
YVGGEAPPLSKMGGSDWANAKKKARKAVRDIAVELVKLYSARVASKGHAFSPDTPWQHEL
EEAFPYAETLDQLTTIDEVKRDMERAIPMDRLIAGDVGFGKTEVAVRAAFKAVQDGKQVA
MLVPTTLLAEQHLETFQNRFAGFPVRLRALSRFQSDAEAKDTIDGLAAGTVDVVIGTHRL
LSDNVLYKDLGLLIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREM
STLATPPEDRHPILTFVGPRSDKQITAAIRRELLREGQVFFVHNRVSSINRVAAQISELV
PEARVAVAHGKLGEHRLEQVVQDFWERKFDVLVSTTIIETGLDIANANTIIIDSADKYGL
SQLHQLRGRVGRSRERAYAYFLYDPDKPLTETAHERLETLATNNELGSGMQVALKDLELR
GAGNLLGGEQSGHIAGVGFDLYLRMIGEAVNTFKGEESTGPVELVLELPVDAHIPEEYVE
SERLRLEAYQKFSAASHPQAPEDHVALVLEELTDRYGEPPAEVQRLAAVSALRRRAAKLG
LSKVVAAGPALRIEPVKLLDSRRMRMNRMYPGSRYTEATGTLQIPLPGGTALARSPLAGV
GQRATGDEGDIVAWAGRVLATLLEEEAAPAQ
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctgcggggcatcgaccggctgctcgaggcgtcgccgtcgttcgcgcgggcgctc
gacgccgccgacggctcggtcgcgaccgacgccgacttctcggtcgccgaggggttgcga
gccccgctcatcgccgggctgctgcggcggcgtcgcgaagcgggcgaccacggcgcactg
ctcgtgatcgcggcgaccagccgcgaggccgacgcgctgcgctcggccctcgcctcgctc
gtgcccgaggccgtgaccgccgagttcccggcgtgggagacgctgccgcacgagcggctg
agccccagcgccgagaccgtcggtcgccgtgccgcggccctgcggctgctgcgtgagcac
accgcgtcgcagccgctcgtcctggtggcctccgtgcgggcggcgctgcagcccgtgtcg
ccgcacgccgcgcaggcagagccgctggtcctccgccccggcgagcagccggcggcctcg
gggtccccaggtcgtgggctcgacctcgtcgcgcgcgagctggtgctgcgcgcctacacc
cgcgtcgacatggtcacccgccgcggcgagttcgcggtgcgcggcggcatcctcgacgtg
ttcccgcccaccgccgagcaggcgctgcgagtcgacttcttcggcgacgaggtcgaccag
atccgccgcttcgcggtctccgaccagcgcagcgcgggcgaccccgttcccgagctcgag
ctgtggccggcgcgcgagctgctgctcaccgacgacgtgcgcgagcgcgcggcccagctg
ctgccgcgcttccccgcgctctcctcgctgctcgagaagatgagccagggcatccccgtc
gagggcatggagagcctgctgccgcagctcgtgcccggggtcgcgccgctcaccgcgctg
ctgccgcagggcggcgccgtggtcgtggcgtcgcccgagcgcgtcgcgggccgcgcggtg
agcctcgccgagaccaaccgcgagttcctcgaggccgcgtggagcgccgccaccgcgggg
gccgacgcgcccgtgcccaccgaagacagcggcatgctctcggtctccgagctgcgcgcc
gcctcccggggccgaccgtggtggacggtctcgaccttcgtcgcgggcgacggcgatccg
acggatgaacccgcctcgcccaccgagccggtcgagggcggcgccggtcctcacccggag
gccgatcacatcaacgtggccggcggccccttcccgcgaccggcggcgggagccgacgcg
acgagcgccgcgatccgcctgttctccgagcgactgcgcgagggctggcgggtggtcgtc
accgcgcagggcgtcggcctcgtcgagcgcgcccgcgacgtgctggtcgaggcaggggcg
gccgcccgcatggtcgacgagctgcccgagcgcctcgaacccggtgtggtctacctcgtg
gcgggcacggcctggtcgggcttcgcgagcgacgaggccgcgctgctgctcgcgagcgag
gccgagttcttcggccgctccgtcggctctcaggcggcgagcggtcagaagctggcgcgc
cgccgcggcaagaacgtcgtcgacccgctgaagctcgtcgcgggcgactacgtggtgcac
gagacccacggcatcggccgcttcgtcgagctgacgcagcgactcgtgcccaccggcatc
gggcgcgacgcggcgaaggcgctgcgcgagtacctggtgctcgagtacgcgtcgaccaag
cgcggcatgcccaaggacaagctgtacgtgcccaccgatcagctcgaccagctctcccgc
tacgtcggcggcgaggccccgccgctctcgaagatgggcggcagcgactgggcgaacgcg
aagaagaaggcgcgcaaggcggtgcgcgacatcgccgtcgaactggtgaagctctactcg
gcgcgcgtcgcgtcgaagggccacgcgttctcgcccgacaccccgtggcagcacgagctc
gaagaggcgttcccgtacgccgagacgctcgaccagctcaccaccatcgatgaggtcaaa
cgagacatggagcgcgcgatcccgatggatcgcctcatcgcgggcgacgtgggcttcggc
aagaccgaggtggcggtgcgggccgcgttcaaagccgtgcaagacggcaagcaggtcgcc
atgctcgtgccgacgacgctgctcgccgagcagcacctcgagaccttccagaaccgcttc
gccgggttcccggtgcgcctgcgcgccctcagccgcttccagagcgacgcagaggcgaag
gacacgatcgacgggctcgccgcgggcaccgtcgacgtggtcatcggcacgcaccggctg
ctctccgacaacgtgctctacaaagacctggggctgctcatcatcgacgaggagcagcgc
ttcggcgtcgagcacaaggacgcgctgaagaagctcaagaccaacgtcgacatcctcgcg
atgagcgccaccccgatcccgcgcacgctcgagatggccgtgaccggcatccgcgagatg
tcgaccctcgccaccccgcccgaggaccgccacccgatcctcaccttcgtgggcccccgc
agcgacaagcagatcacggccgcgatccgccgcgagctgttgcgcgaggggcaggtgttc
ttcgtgcacaaccgtgtctcgtcgatcaaccgcgtcgcggcgcagatctccgagctcgtg
cccgaggcgcgggtcgcggtcgcgcacggcaagctcggcgagcaccggctcgagcaggtc
gtgcaagacttctgggagcgcaagttcgacgtgctcgtctcgaccaccatcatcgagacc
gggctcgacatcgcgaacgccaacacgatcatcatcgacagcgccgacaagtacgggctc
agccagctgcaccagctgcgcggacgtgtgggccgcagccgcgagcgcgcctacgcctac
ttcctctacgaccccgacaagccgctcaccgagaccgcgcacgagcgcctcgagacgctc
gccaccaacaacgagctgggctctggcatgcaggtcgccctgaaagacctcgagctgcgc
ggcgcgggcaacctgctcggcggcgagcagtcggggcatatcgccggcgtcggcttcgac
ctctacctgcgcatgatcggcgaggccgtcaacacgttcaagggcgaggagtcgacgggc
cccgtcgagctggtgctcgagctgcccgtcgacgcgcacatccccgaggagtacgtcgag
agcgagcgcctgcgcctcgaggcgtaccagaagttctcggccgcgtctcatccgcaggca
cccgaggaccacgtcgccctcgtgctggaagaactcaccgaccgctacggcgagccgccc
gccgaggtgcagcgcctcgccgcggtctcggcgctgcgccggcgcgccgcgaagctcggt
ctctcgaaggtcgtcgcggcgggccccgcgctgcgcatcgagcccgtcaagctgctcgac
tcccgccgcatgcgcatgaaccgcatgtacccgggttcgcgctacaccgaggcgacgggc
acgctgcagatcccgctgcccggcggcacggcgctcgcccgcagtccgctggcgggagtg
gggcagcgcgccaccggcgacgagggagacatcgtcgcctgggcggggcgcgtgctcgcg
acgctgctcgaagaggaggccgcgcccgcgcagtga
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