Leisingera sp. NJS201: ETW23_09115
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Entry
ETW23_09115 CDS
T08375
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lev
Leisingera sp. NJS201
Pathway
lev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ETW23_09115 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lev03400
]
ETW23_09115 (mfd)
Enzymes [BR:
lev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ETW23_09115 (mfd)
DNA repair and recombination proteins [BR:
lev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ETW23_09115 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
MFD_D3
AAA_16
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBR36279
LinkDB
All DBs
Position
1838789..1842253
Genome browser
AA seq
1154 aa
AA seq
DB search
MAQRAITMGGAPEGFDARLILKEVQKSGAPVLHVARDDKRMEAMRSALAFFAPQMPVFVF
PGWDCLPYDRVSPNADISAARMATLAALVHQMPKQFVLLTTLNAANQRVPARGVLREAAF
TARVDHRIDEGALRNFLVRMGFTQSPTVMEPGDYAVRGGIIDIFPPGESGPVRLDLFGDV
LDGARRFDPASQRTTEKLEVVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHQGIEHWLPFFHEKLETLFDYLPQATVTLDDQVTPARLARWDTIEDQFETRKHAM
AQKGRIDTVYKPTPPGLLYLDDAAWETASAAHRVVQLHPLPQASGPGTADAGGRIGRNFA
PERQQESISLFGALASHIKARMQEGPVLIASYSEGARERLTGLIEDEGLAEAIPVMDGTR
IGKSGLHLAVWALEHGFQAPDMTVISEQDVLGDRLIRAPKKRRKAENFLTETQSLSPGDL
VVHVDHGIGRYKGLEVVTAAGAAHECILLEYAEASKLYLPVENIELLSKYGHDEGLLDRL
GGGAWQAKKAKLKERIREMADKLIRIAAERALRKAPVMDPPPHAWEEFSARFPYQETDDQ
LRAIEDVMEDLHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVVAPTTLLARQH
AASFAERFRGFPLQVRQLSRFVSTKEASQTREGLAKGTVDIVVGTHAVLAKNIRFQNLGL
LIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVSEFDTVTIREALLREHYRGGQSFYVVPRITDLPDVEAFLQAQLPELTYVVAHGQM
AAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLSQLYQIRGRVGR
SKTRAYAYLTTKPRQRLTPAAEKRLRVLGSLDTLGAGFTLASQDLDLRGAGNLLGDEQSG
QMRDVGYELYQSMLEEAIAKIKAGEMEGLSDADAHWAPQINLGVPVLIPETYVPDLDVRL
GLYRRLSSLSTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKGMCKRAGIAKMDGGPKG
ATIQFHNDKFASPQGLVEFIQGQNGLAKVKDNKIVVRRDWKKDSDKIKGAFAIARDLAEK
VVAEKKKAKAKAKA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcgtgcaatcaccatgggcggcgcgcccgaagggtttgatgcccggctgatc
ctgaaggaagtgcagaaatccggcgcgccggttctgcatgtggcgcgtgacgacaagcgg
atggaggcaatgcggtcggcacttgccttttttgcgccgcagatgccggtgtttgtcttt
cccggctgggattgcctgccatatgaccgggtatcgccgaacgccgatatctcggctgcg
cggatggccacgctggcggccctggtgcatcagatgcccaagcagtttgtgctgctgacc
acattgaacgccgccaaccaaagggtgcctgcgcgcggggtgctgcgcgaggcggccttt
actgcccgtgtcgatcaccggattgacgaaggcgcgctgcgcaatttcctggtacgcatg
gggttcacccaaagcccgacggtgatggagccgggcgactatgcggtgcgtggcggtatc
atcgatatattcccgccgggggaaagcggcccggtgcggctggatctgttcggcgatgtt
ctggatggcgcacggcggttcgatccggcctcgcagcgcaccaccgagaaactggaggtg
gtggagctggcgccggtgtccgaagtgatcctggacgaggcggcaatcacccggttccgt
cagaattaccggattgaattcggcgccgccggtacagatgatccgctatacgaggcagtg
agtgcagggcgcaagcatcaggggatcgagcattggctgccgttcttccatgaaaagctg
gaaaccctgttcgactacctgccgcaggcgacggtgacgctggatgatcaggtaacaccg
gcacggctggcgcgctgggacaccatcgaggaccagtttgaaacccgcaaacacgcaatg
gcgcagaagggacggattgataccgtctataaacccacgccgccgggcctgctgtatttg
gatgacgccgcttgggagaccgcatcggccgcgcaccgcgtggtgcaactgcacccgctg
ccgcaggcctcgggtcctggcaccgcggatgccggcgggcggatcgggcgcaacttcgca
cccgagcggcagcaggaaagcatcagccttttcggtgctttggcatcccatattaaggcg
cggatgcaggaggggccggttcttattgcctcttactccgaaggggcgcgcgaacgcctg
accgggctgattgaggatgaaggcctggcagaagccatcccggtgatggatggcacgcgg
atcggcaaaagcggcctgcatctggcggtctgggctctggagcacgggttccaggcgccg
gacatgacggtgatctcggagcaggatgttctgggcgaccggctgatccgggcacccaag
aaacgccgcaaggccgagaactttctgaccgaaacgcaatcgctcagccctggtgatctg
gtggtgcatgtggaccatggcatcggccgctacaaggggctggaagtagtgacggcggca
ggtgctgcgcatgaatgcatcctgctggaatatgccgaagcgtccaaactgtacctgccg
gtcgaaaacatcgaactgctgtccaaatacggccatgacgaaggtctgttggaccggctg
ggcggcggcgcctggcaggccaagaaggccaagctcaaggaacgcatccgcgagatggcg
gacaagctgatccgcattgcagctgaacgcgccctgcgcaaggcaccggtgatggacccg
ccgccgcatgcctgggaggagttttctgcccgcttcccctatcaggagaccgacgaccag
ctgcgcgccatcgaggacgtgatggaggatctgcactccggccagccgatggaccggctg
atctgcggcgatgtgggttttggcaagaccgaggtggcaatgcgcgcggcttttgtcgcg
gcgatgtccggcctgcaggtggcggtggtggcaccgactacactgctggcacgccagcac
gcggcctcctttgccgagcgttttcgcgggtttcctttgcaggtcaggcagttgtcgcgt
tttgttagcaccaaagaagccagccagacccgtgaagggctggccaaggggaccgtcgat
atcgttgttggaacccacgcggtactggccaagaacatcaggttccagaacctcgggctg
ctgatcatcgacgaggaacagcactttggcgttggccacaaggaacggctgaaacagctg
cgcagcgacatccatgtgctgacgctgacggccacgccgatcccgcgcacactgcagctg
tcgctgaccggtgtgcgggacctgtcgatcatcggaaccccgccggtggaccgtctggcg
atccgcacctacgtcagcgagtttgacactgttactatccgcgaggcgctgctgcgcgag
cattaccgcggcgggcaaagcttctatgtggtgccgcggatcaccgacctcccggatgtc
gaggcgttcctgcaggcacagctgcctgaactcacctatgtggtggcgcatgggcagatg
gctgcgggcgaactcgacgaccggatgaacgcgttttacgacggcaaatttgacgtcctg
ctggcaacaacgattgtggagtcgggcctcgacattccgaccgccaacacgatggttgtg
caccgcgccgacatgttcggcctgtcgcagctctatcagatccggggcagggtggggcgt
tcgaaaacccgtgcctatgcctatctcaccaccaaaccgcgtcagcggcttacaccggcg
gcagagaagcggctgcgggtgctgggctcgctcgacacattgggcgccggctttaccctg
gcctcgcaagaccttgatctccgcggagcgggcaatttgctgggcgatgagcaatccggc
cagatgcgcgatgtggggtatgaactgtaccagtcgatgctggaggaggcgattgccaag
atcaaggcgggtgagatggagggcctctcggacgctgatgcgcactgggcgccgcagatc
aatctgggcgtgccggtactgatcccggagacctatgtgccggatctggatgtgcgcctc
gggctgtaccgccgcctgtcgtcgctctcgaccaaagttgagctggaaggatttgcggct
gagctgatcgaccgtttcggcaagctgccgaaagaggtcaacacgctgatgctggtggtg
cggatcaagggaatgtgcaaacgcgcaggcatcgccaagatggacggcgggccgaaaggc
gcaacgatccaattccacaatgacaaattcgcctcgcctcaggggctggtggagttcatc
cagggccaaaacggtctggccaaggtaaaggacaacaaaatcgtcgtgcgccgggactgg
aagaaagacagcgacaagatcaagggcgcctttgccattgcccgcgacctggcagagaaa
gtcgtggcagagaagaaaaaggccaaggcaaaagcgaaagcttga
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