Lelliottia sp. WB101: DAI21_03310
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Entry
DAI21_03310 CDS
T05398
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lew
Lelliottia sp. WB101
Pathway
lew03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lew00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DAI21_03310 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lew03021
]
DAI21_03310 (rpoC)
03400 DNA repair and recombination proteins [BR:
lew03400
]
DAI21_03310 (rpoC)
Enzymes [BR:
lew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DAI21_03310 (rpoC)
Transcription machinery [BR:
lew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DAI21_03310 (rpoC)
DNA repair and recombination proteins [BR:
lew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DAI21_03310 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
AVY96783
LinkDB
All DBs
Position
complement(697917..702140)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDASGEFVAKTSLIDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPQKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINREGKEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISGGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIDSAGSSDFLEGEQVEYSRVKIANRDLEANGKVAALYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtctttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccaaactaaagtgcgccgtgag
cgcatgggccacatcgagcttgcgtctccgactgctcacatttggttcctgaaatctctg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcttatgttgttatcgaaggcgggatgacgaatctggaacgtaaccagattctg
accgaagaacagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaaaatg
ggtgcggaagctattcaggccctgctgaaaagcatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaaaccagagtggatgattctgacc
gttctgccggttctgccgccagatctgcgtccactggttccgctggatggtggtcgtttc
gcgacttccgacctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgactgttggatctggctgcgcctgacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggccaccactatcaaagccgctaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaactctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaattcagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggccctaaagaagctgagcgtatttaccgagctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatacgaaaaagatgcgagc
ggcgaattcgttgcgaaaaccagcctgatcgatacgactgttggtcgtgcgattctgtgg
atgatcgtgccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggtctgaaaccgaccgttatcttc
gctgaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatctgttggt
atcgatgacatggtgatcccacagaagaaatacgagatcatcagcgaagccgaagctgaa
gtggccgaaatccaggagcagttccagtctggtctggttaccgcgggcgaacgctacaac
aaagttatcgatatttgggctgcggcgaacgatcgcgtttccaaagcgatgatggacaac
ctgcaaactgaaaccgtcattaaccgtgaaggtaaagaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttccgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaaaccagatggttccatcatcgagacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcaaactccggttatctgacgcgtcgtctg
gttgacgttgctcaggatctggtggtgactgaagacgattgtggcaccctcgaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccactgcgcgatcgcgttctg
ggtcgtgtgactgctgaagacgtactgaaaccaggtaccgcagacattctggttccacgc
aacactctgctgcacgaacagtggtgtgacctgctggaagagaactctgtcgactccgtg
aaagtgcgttctgtcgtatcctgtgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaagggtagcatcaagctg
tctaacgccaagtcggttgttaactccgctggcaagctggttgtgacctctcgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctacaaagtaccttacggt
gctgtgatggcgaaaggcgatggcgaacaggttgctggcggcgagaccgtagcaaactgg
gatccgcacaccatgccggtaatcaccgaagtggcgggattcattcgcttcaccgatatg
atcgatggccagacgattactcgtcagaccgacgaactgaccggtctctcctctctggta
gttctggattctgcagaacgtaccgcgggtggtaaagatctgcgtccggcactgaaaatc
gttgatgctaacggtaacgacgttctgatcccaggcaccgatatgcctgctcagtacttc
ctgccaggtaaagcgattgtccagctggaagatggcgtacagatcagcggtggtgacacc
ctggcgcgtattccacaggaatctggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcacgtcgtccgaaagagccagctatccttgcggaaatcagc
ggcatcatttccttcggtaaagagaccaaagggaaacgtcgtctggttatcactccgtta
gacggtagcgaaccatacgaagagatgattcctaagtggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgatggtccagaagcgccgcacgacatt
ctgcgtcttcgtggtgttcacgcggtaacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcaaccatcgatagcgctggcagctcggacttcctggaaggcgagcaggtg
gaatactcccgcgtcaagattgcaaaccgcgatctggaagcgaacggcaaagtggcggcg
ctctactcccgcgacctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatccttccaggagaccacgcgtgtcctgaccgaagcagctgttgcgggtaaa
cgtgatgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggttatgcttaccaccaggatcgtatgcgtcgtcgtgctgcgggcgaactgccagct
gcacctcaggtaactgcggaagatgcttctgcaagcctggcagaactgctgaacgcaggt
ctgggcggctctgacaacgattaa
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integrated database retrieval system
