Lysobacter enzymogenes C3: GLE_1619
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Entry
GLE_1619 CDS
T04371
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lez
Lysobacter enzymogenes C3
Pathway
lez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLE_1619 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lez03400
]
GLE_1619 (mfd)
Enzymes [BR:
lez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLE_1619 (mfd)
DNA repair and recombination proteins [BR:
lez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GLE_1619 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALN56976
UniProt:
A0A0S2DEX5
LinkDB
All DBs
Position
complement(1743379..1746837)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPALLPKTGQQRAWWRAPASPSALAWAIARAAAEHDAPLLAIARDNHGAHQLEADLRTLL
GAAGAHDGALPVLPFPDWETLPYDVFSPHPDIVSQRLSALHRLPTLKRGIVVVPVQTLLQ
RLAPLRHVVGGSFDVRVGQRLDLDGEKRRLESAGYRHVPQVLDPGDFAVRGGLLDVYPMG
ADSPFRVELLDDEIETIRAFDPESQRSLDKIQRVHLLPGREVPLDEASLKRALDALRERF
DLDTRRSALYQDLKAGLAPSGIEYYLPLFFEQTATLFDYLAADALPVIADGALEAADAFW
AQTGQRYEQRRHDIERPLLPPDQLYLSPVGLRERLNQGARIELCGEQHAQRSRAIALGDQ
PAPSLPVAARDAAPAEALKSFLSKYPGRVLVAADSAGRREALLEVLQSAGLRPDVVADWS
AFQAGDARFAIAVAPLDDGFATDEPALAVLTERQLFPERASQPRRRKRAGREPEAIIRDL
GELSEGAPIVHEDHGVGRYRGLIVLEAGGQPGEYLEIEYAKGDRLYVPVAQLHLISRYSG
ASVETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLALDVDRAMYEPFA
AAFPFEETPDQHSSIEAVIRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFVAAAAGKQVAV
LVPTTLLAEQHYRNFRDRFADWPLKVEVLSRFKTGKEIKAELEKLTEGKIDVVVGTHRLL
QNDVRFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLS
IIATPPAHRLAVQTFVVPWDDMQLREAFQRELSRGGQVYFLHNDVESIGRMKRQLEELVP
EARIGIAHGQMAERELESVMLDFHKQRFNVLLCTTIIESGIDIPNANTIIMNRADKFGLA
QLHQLRGRVGRSHHRAYAYLVIPDQRSITADAQKRLEAIASMDELGAGFTLATHDLEIRG
AGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDVDSTDARGAEVELHIPALIPE
DYLPDVHTRLTLYKRVSGARSSEELRELQVEMIDRFGLLPDAAKHLFAVAELKLGATALG
IRKLDLGDKGGRLQFVERPNVDPLSIIKMIQGQPKLYQMDGPDKLRIKLELPDAPARLAA
AKGLLTLLDTKH
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgctcttctgcccaagaccggccagcagcgcgcctggtggcgcgcgccggcctcg
ccctccgcgctggcctgggcgatcgcccgcgccgccgccgaacacgacgccccgctgctg
gcgatcgcccgcgacaaccacggcgcgcaccagctcgaagccgacctgcgcaccctgctc
ggcgccgccggcgcccacgacggcgcgctgccggtgctgccgttcccggattgggaaacg
ctgccctacgacgtcttcagtccgcatccggacatcgtctcgcagcgcctgtccgcgctg
caccggctgcccacgctcaagcgcggcatcgtggtggtgccggtgcagaccctgctgcaa
cggctggcgccgctgcgccacgtggtcggcggcagcttcgacgtgcgcgtcggccagcgc
ctggacctggacggagaaaagcgccggctcgaatcggccggctaccggcacgtgccgcag
gtgctcgatcccggcgacttcgccgtgcgcggcggcctgctcgacgtctacccgatgggc
gcggattcgccgttccgggtcgagctgctcgacgacgagatcgagaccatccgcgcgttc
gatcccgaatcgcagcgctcgctcgacaagatccagcgcgtgcacctgctgccgggccgc
gaagtgccgctggacgaggcctcgctcaagcgcgcgctggacgcgctgcgcgaacgcttc
gacctcgacacccgccgcagcgcgctgtaccaggacctcaaggccgggctggcgccgtcg
ggcatcgagtactacctgccgctgttcttcgaacagaccgcgaccctgttcgactacctc
gccgccgacgcgctgccggtgatcgccgacggcgcgctggaggccgccgacgcgttctgg
gcccagaccggccagcgctacgagcaacgccgccacgacatcgaacggccgctgctgccg
ccggaccagctctatctgagcccggtcggcctgcgcgaacggctcaaccagggcgcgcgc
atcgaactgtgcggcgagcagcatgcgcagcgttcgcgcgcgatcgcgctcggcgaccag
ccggcgccgagcctgccggtggccgcgcgcgacgccgcgccggccgaggcgctgaagtcg
ttcttgtcgaagtatcccggccgcgtgctggtcgccgccgacagcgccggccgccgcgag
gcgctgctggaagtgctgcaatcggccggcctgcgccccgacgtggtcgccgactggagc
gcgttccaggccggcgatgcgcgcttcgcgatcgcggtggcgccgctggacgacggcttc
gccaccgacgagccggcgctggcggtgctgaccgaacgccagctgttccccgaacgcgcc
tcgcagccgcgccggcgcaagcgcgccgggcgcgagcccgaggcgatcatccgcgacctc
ggcgagttgtccgagggcgcgccgatcgtgcacgaggaccacggcgtcggccgttaccgc
ggcctgatcgtgctcgaagccggcggccagcccggcgaatacctggaaatcgagtacgcc
aagggcgaccggctgtacgtgccggtcgcgcaactgcacctgatcagccgctactccggc
gcgtcggtggaaaccgcgccgctgcattcgctcggcggcgagcaatggaccaaggccaag
cgcaaggccgcggaaaaagtccgcgacgtcgccgccgaactgctggagatccaggccaag
cgccaggcccgcgccggcctcgcgctggacgtcgaccgggccatgtacgaaccgttcgca
gcggccttcccgttcgaagaaacgcccgaccagcactcctcgatcgaggcggtgatccgc
gacctcggcagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttcggcaag
accgaagtcgcggtgcgcgcggccttcgtcgccgccgcggccggcaagcaggtcgcggtg
ctggtgccgaccacgctgctggccgagcagcactaccgcaatttccgcgaccgcttcgcc
gactggccgctcaaggtcgaagtgctgtcgcgcttcaagaccggcaaggagatcaaggcc
gagctggagaagctgaccgaaggcaagatcgacgtggtcgtcggcacccatcggctgctg
cagaacgacgtgcgcttcaaggacctgggcctggtcatcgtcgacgaagagcagcgtttc
ggcgtgcgccagaaggaagcgctgaaggcgctgcgcgccaacgtgcacctgctgacgctc
accgccacgccgatcccgcgcacgctgaacatggcgatggccggcctgcgcgacctcagc
atcatcgccaccccgccggcgcaccggctggcggtgcagaccttcgtcgtgccctgggac
gacatgcaactgcgcgaggcgttccagcgcgagctctcgcgcggcggccaggtgtatttc
ctgcacaacgacgtcgagagcatcggccggatgaagcgccagctcgaagagctggtgccg
gaagcgcgcatcggcatcgcccacggccagatggccgagcgcgagctggagagcgtgatg
ctcgacttccacaagcagcgcttcaatgtgctgctgtgcacgaccatcatcgagtcgggc
atcgacatccccaacgccaacaccatcatcatgaaccgcgccgacaagttcggcctggcc
cagctgcaccagttgcgcggccgcgtcggccgctcgcaccatcgcgcctacgcctacctg
gtgatccccgaccagcgctcgatcaccgccgacgcgcaaaagcggctggaggccatcgcg
tcgatggacgaactcggcgccggcttcaccctggccacccacgacctggaaatccgcggc
gccggcgaactgctcggcgaggaccagagcgggcagatggccgaggtcggcttcagcctg
tacaccgagttgctggaacgcgcggtgcgctcgatccgccagggcaagctgccggacgtg
gattccaccgacgcgcgcggcgccgaagtcgagctgcacattccggcgctgatccccgag
gactacctgcccgacgtgcacacccgcctgaccctctacaagcgcgtcagcggcgcgcgc
agcagcgaggaactgcgcgagctgcaggtggagatgatcgaccgcttcggcctgctgccg
gatgcggccaagcacctgttcgcggtcgccgaactcaagctcggcgcgaccgcgctgggc
atccgcaaactcgacctgggcgacaagggcgggcgcctgcagttcgtcgaacgtccgaac
gtcgacccgttgtcgatcatcaagatgatccagggccagcccaagctctaccagatggac
ggccccgacaaactgcggatcaagctcgaactgcccgacgcgccggcgcggctggccgcg
gcgaagggattgttgaccctgctcgataccaagcactga
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