Lysobacter enzymogenes C3: GLE_3698
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Entry
GLE_3698 CDS
T04371
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lez
Lysobacter enzymogenes C3
Pathway
lez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GLE_3698 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lez03400
]
GLE_3698 (ligD)
Enzymes [BR:
lez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GLE_3698 (ligD)
DNA repair and recombination proteins [BR:
lez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GLE_3698 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALN59042
UniProt:
A0A0S2DKL0
LinkDB
All DBs
Position
complement(4162892..4165528)
Genome browser
AA seq
878 aa
AA seq
DB search
MSLHEYRRKRRFDRTREPEPGAPPRGERAIFVVQLHHASRRHYDFRLQVGDALKSWAVPK
GPSYDPAVKRMAVEVEDHPLGYAGFEGEIPHGEYGGGHVARFDTGVWATDGDPQAQLAKG
HLRFELFGRKLKGGWHLVRSGKPARQPQWLLFKDRDEYAGTLEADDLLADVASPPAADAQ
RAGRGKPRKRRLAEVAPARARRRDWAAAARKLPGARRAPFDGGAFELQLARLVEAPPPGE
QWLHELKWDGYRIGVGVAAGRARLWSRNALEWTRKIPEIAAAVEALGLDSAALDGELIAG
RGAREDFNLLQATLSGEKQGALSLVVFDLLHLDGWDLSAAPLLQRKALLEQLLQRAGPHL
RYSSHILGEGERAYALADEQGFEGIVSKRADRAQHPGRSDEWRKSKRLASDEFAVVGYTP
PKGARSGFGALLLARPDPAHGWSYAGRVGSGFSADLLARISKRLPRGAAAPTVHVPPHDT
DLRAARWFAPALVVEAFYRGVGGHGLLRQASFKTLREDKTPAALADRDRGPGAAARLRSN
SNSNSGPPPKRTAMTRKAAKASAGKAKAGKTRTGKSQAAADLDDFRLTSPERVVYPDIGA
SKRDVAAYYLAMADWLLPDIVDRPLSIVRCTQGAARPCFFQKHHTAGLDDVDSVSLEEES
GQRADYLVVRDLAGLMNLVQFNALEFHPWGATAQRPDRADRIVFDLDPGSGVPWTEVIAA
ARQLRSLLAKLELQSFVRTSGGKGLHVVVPLNPGCDWDLVKPFAHSFAETLAQMEPLKYI
ATATKKFRNGKIFVDYLRNGRGATSVASFSLRAREGAPVAMPLRWEELGRVKSGHAFDIR
SAQARVKRLRRHPWAGIDAVRQDLDRLAERLQRLRPDD
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacgaataccggcgcaagcggcgcttcgaccgcacccgcgagcccgaaccg
ggcgcgccgccgcgcggcgagcgcgcgattttcgtcgtccagctgcaccacgccagccgc
cgccactacgacttccgcctgcaggtcggcgacgcgctcaagagctgggcggtgcccaag
gggccgtcctacgatccggcggtcaagcgcatggcggtggaagtcgaggaccacccgctc
ggctacgccggtttcgaaggcgaaattccccacggcgaatacggcggcggccacgtcgcg
cggttcgacaccggggtgtgggcgaccgacggcgatccgcaggcgcaactggccaagggc
cacctgcgcttcgaactgttcgggcgcaagctcaagggcggctggcacctggtgcgttcg
ggcaagcccgcgcgccagccgcaatggttgttgttcaaggaccgcgacgaatacgccggc
acgctcgaagccgacgatctgctcgccgacgtcgcctcgccgccggcggccgacgcgcag
cgtgccggccgcggcaagccgcgcaagcgccgcctggccgaagtcgcgccagcgcgcgcg
cggcgccgcgactgggccgcggcggcgcgcaagctgcccggcgcgcggcgggcgccgttc
gacggcggcgcgttcgagctgcagttggcgcgcttggtcgaagcgccgccgccgggcgaa
caatggctgcacgaactcaaatgggacgggtaccggatcggcgtcggcgtggccgccggc
cgcgcgcggctatggtcgcgcaacgcgctggagtggacgcggaagattcccgagatcgcc
gccgcggtcgaagcgctgggcctggacagcgcggcgctggacggcgaactgatcgccggc
cgcggcgcgcgcgaggacttcaacctgctgcaggcgacgctgtcgggcgagaaacagggc
gcgctgtcgctggtggtgttcgacctgctgcacctggacggctgggacctcagcgccgcg
ccgctgctccagcgcaaggcgctgctggaacaactgctgcagcgggccgggccgcatttg
cgctacagctcgcacatcctcggcgaaggcgagcgcgcctacgcgctggccgacgaacag
ggcttcgaaggcatcgtgtccaagcgcgccgaccgcgcccagcatcccggccgcagcgac
gaatggcgcaagagcaagcgactggccagcgacgagttcgccgtggtcggctacacgccg
ccgaagggcgcgcgcagcgggttcggcgcgttgctgctggcgcggccggacccggcgcac
ggctggtcctacgcggggcgcgtcggcagcggtttttccgccgacctgctggcgcggatc
agcaagcgcctgcccaggggcgccgccgcgccgacggtgcacgtgccgccgcacgacacc
gacctgcgcgcagcgcgctggttcgcgccggcgttggtggtcgaggcgttctatcgcggc
gtcggcggccacggcctgctgcggcaggcctcgttcaagacgttgcgcgaggacaagacg
cccgccgcgctggccgaccgcgaccgcggtccgggcgccgcggcccggcttcgctccaac
tccaactccaactccggaccgccaccgaagcgaaccgccatgacccgcaaggccgccaaa
gccagcgccggcaaggccaaagccggcaagacgcgcaccggcaagtcccaggctgccgcc
gatctcgacgacttccgcctcaccagccccgaacgcgtggtctatcccgacatcggcgcg
agcaagcgcgacgtcgccgcctactatctggcgatggccgactggctgttgccggacatc
gtcgaccggccgctgtcgatcgtgcgctgcacccagggcgcggcgcggccgtgcttcttc
cagaagcaccacaccgccgggctagacgacgtggacagcgtcagcctggaagaggaatcg
ggccagcgcgccgactatctggtggtgcgcgatctggccggactgatgaacctggtccag
ttcaacgcgctggagttccatccgtggggcgcgacggcgcagcggcccgaccgcgccgac
cgcatcgtgttcgatctcgaccccggcagcggcgtgccctggacggaggtgatcgccgcc
gcgcgccagttgcgctcgctgctggccaagctggaactgcagtcgttcgtgcgcacctcc
ggcggcaagggcctgcatgtggtggtgccgctgaaccccggctgcgactgggacctggtc
aaaccgttcgcgcacagcttcgccgagaccctggcgcagatggagccgctcaaatacatc
gccaccgcgaccaagaaattccgcaacggcaagatcttcgtcgactacctgcgcaacggc
cgcggcgccaccagcgtggcatcgttctcgctgcgcgcgcgcgagggcgcgccggtggcg
atgccgctgcgctgggaggaactgggccgggtcaagagcggccacgcgttcgacatccgc
tccgcgcaggcgcgggtcaagcgcctgcgccggcatccatgggcggggatcgacgcggtg
cgccaggacctggaccgcctggccgaacgcctgcagcggctgcggccggacgattga
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