Leptospirillum ferrooxidans: LFE_2345
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Entry
LFE_2345 CDS
T01809
Name
(GenBank) putative transcriptionrepair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfc
Leptospirillum ferrooxidans
Pathway
lfc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LFE_2345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfc03400
]
LFE_2345
Enzymes [BR:
lfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LFE_2345
DNA repair and recombination proteins [BR:
lfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LFE_2345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAM08017
UniProt:
I0IRW8
LinkDB
All DBs
Position
2419219..2422584
Genome browser
AA seq
1121 aa
AA seq
DB search
MTRGDEISLAGIPPEASFLLPGLILDQIPDRTLWILTANMERARSLYNDINSFNALFPEA
PDGLLLPEEEILPYEEESPPDLLRAERISVLSELSRRPVSFVVSTFPAIARKTLPKRLLS
GGLSEITLGTLVDRQELIQSLVALGFFRVPQVTAPGEFSVRGAILDLYTPSRPEPVRLEF
TDDELTSMRGFDPNTQRSMGSIEKLDLAPSHEWLPPINRSHFSEELKDFLSVHQATPLAP
GIERYIGQFYDDITSPLDYTPDPVLFIEDPHALEIRINDWQERIRDAYESIPAEERALLP
PPEKAFIPFGAREKTPFSFGSDHPRILLSVFRDDPDAPDLFSPPEKLIDRNESWILRLRE
LSSRMRVITFFGSRGQRDRFQEILENQAIPFTPLSELQEENPPPEGSIQTILGDIGEGIY
IAPDNTLLVSDTFLFRKKYDRTRETRFRTAAAAFRRDQIRLAEGEPVVHLQQGIGIYRGL
REIEVGNIPGEFLIVEYRDGDKLYVPVDQVDLLKPWRGPEGSPPKLDRLGGHSWQKTRSR
VRKEIEKISQELVDLYAKRKALPGFPFSQDSVMISEFENAFPHDLTPDQEEATRDIREDM
ESPTPMDRLVLGEVGFGKTEVAMRAAFKAVADGKQVAVLVPTTLLCLQHFETFKERFSGF
PVRVEQISRILTAKEQRLLRQDLSEGKIDIMIGTSALLGAQNIFRDLGLLIIDEEQRFGV
GHKEKLKNKYPTVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIKTAILPFDRH
RIREAIDRELARDGQVFFIHNRVSSISRMAHYISSLFPGVPVGVAHGQMDSQLMETIMDR
FISGHYRILVSTAIVESGLDIPQANTIIINRSDLFGIAELYQLRGRVGRSGTQAYCYFLV
AGEGGLTELAKKRLKTLQDNTELGSGYQIAMRDLEIRGAGSLLGHQQTGHISMVGLDLYM
EMVEEAIQTRVEPVAIPVVRETPRIDLGREARLPEDYVVHPGLRIDFYRRLAHSFKDLEI
DQIESELRDRFGPLPRSARALILGAKIRVMTTRMGISEVRLKDREIFLKPSAEKALSPRN
AGKIAQAFPDRITFHRDGSFTLSGPASGFPDDLARLEELLS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgacccggggagatgaaatctcccttgccggaattccccccgaggcctcctttctgctc
ccgggtcttattctcgatcagatccccgacagaacgctctggattctgacggccaacatg
gaacgggcgcgatccctctacaatgacatcaacagcttcaatgccctttttccggaagcc
ccggatgggcttcttctccccgaagaagagattcttccttatgaggaagagagccctccc
gaccttctgagagccgaaagaatctcggtattatccgagctctcaagacgaccggtctcc
ttcgtcgtttcaacctttcctgccatcgccagaaaaacgttacccaaaagacttctgtca
gggggactttccgaaatcaccctgggaacacttgttgaccggcaggaactcatccaatcc
ctggtcgccctcggatttttcagggttccacaggtcactgccccgggagagttttcggtg
agaggtgccatccttgatctttatacaccttcaaggcctgaaccggtcagactcgaattt
acggacgatgagctgacctccatgagaggatttgatcccaatacccaacgatccatgggg
tccatcgaaaaactggatcttgctcctagccatgaatggctgccgcccataaaccgaagc
catttttctgaagaactgaaggacttcctttcagtccaccaggccaccccgctggccccc
ggaatcgagcggtacatcggacagttctacgacgatatcaccagcccgctggactacacc
cccgatcctgtactcttcatcgaagatccccatgccctcgaaatccggatcaatgactgg
caggagaggattcgcgatgcatacgaatccattccggcggaagagcgggcattgctccct
ccgcctgaaaaggccttcattccattcggagccagagaaaaaacccctttttcctttggc
tccgaccatccaaggatcctcttgtctgtcttccgcgatgaccccgatgcgcccgatctc
ttttctcctccggaaaaactgatcgacaggaatgaatcatggatcttgaggctccgggaa
ctctcctcccggatgagggtcatcaccttttttggcagccgtgggcaacgggatcgcttc
caggaaatccttgaaaaccaggccattccttttacgcccctttcagagctccaggaagag
aatcctcctccggaaggatcgatccaaacgatcctcggagatatcggagaaggaatctac
atcgcgccagataacactcttctggtttccgacaccttcctgttccgaaaaaaatatgac
cgcaccagagaaactcgcttccggacagctgcggcggccttccggagggaccagatcaga
cttgccgaaggggaaccggttgtccatctacagcaggggattggtatctatcgggggctt
agagaaatcgaagtggggaacattcccggcgaattcctgattgtcgaataccgtgacgga
gacaagctctatgttccggtcgaccaggtcgatcttctgaaaccctggaggggaccagaa
ggatctccccccaaactcgaccgtcttggtggccattcctggcaaaaaacccgatcgagg
gtacggaaggaaatcgagaaaatctcccaggaactggtcgatctctatgccaaaaggaaa
gcacttccgggatttcccttctcccaggattcggtcatgatctcagaatttgaaaatgct
tttccccatgacctgaccccagaccaggaagaagccacccgggatatccgcgaagacatg
gaatcccccactcctatggaccggctggttcttggagaggtggggtttggaaaaaccgaa
gtcgccatgagagcggccttcaaggccgtcgccgatgggaaacaggttgcggtgctggtt
ccgacgacccttctttgccttcagcattttgaaacattcaaggaacgcttttccggattt
ccagtgagggtcgaacagatttccaggatcctgactgccaaggaacaaagactcctccgg
caggatctttcggaggggaagatcgacattatgatcggaacatccgccctcctgggcgcc
cagaacatcttccgggacctgggactcctgatcattgacgaagagcaaagattcggtgtc
ggacacaaggaaaaactcaaaaacaaatacccgactgtcgatgtcctgactctgtcggcg
acaccgattccccgaacactgcagatgtccctttcgggtcttcgaggaatcagcttcatc
atgacccctcctcccggtcgaaagccgatcaagaccgccattctgccattcgaccgccat
cgtatcagggaagccatcgaccgggaacttgcacgggatggtcaagtcttttttatccac
aaccgcgtcagctcgatctcccgcatggctcactatatttcaagcctctttccgggggtt
ccggtcggagtcgcccatgggcagatggatagccagctcatggagaccatcatggaccga
tttatctcgggtcattatcgtatcctcgtctcaacggcgatcgtggagtccggtctcgac
attccccaggccaacaccatcatcatcaaccgctcggacctttttggaatcgcggaactc
tatcagctccggggaagggtcggacgatccggaacgcaggcctattgttacttccttgtc
gccggagaaggcggtctgaccgagcttgcaaaaaaacggctgaaaacgcttcaggacaac
acagagctgggatccggttaccagatcgccatgagagatctggaaattcgcggagcagga
agccttctcggccatcagcaaaccggacatatctccatggtgggacttgacctctacatg
gagatggtcgaggaagccattcaaacccgggttgagcctgtcgcgattcccgttgtccgg
gaaacacccagaatcgatcttggaagagaagcccgtctcccggaagattatgtcgttcac
cccggattgcgaattgacttttacaggcgtctggcacattctttcaaggatttggagatc
gatcagatcgaatcggagctcagggaccgctttgggcccttgccaagatcggccagggca
ttgatccttggggcaaaaatccgggtcatgaccacccgaatgggaatctcggaagttcgt
ctcaaagacagggaaatctttctcaagccttcagcagaaaaagctctctccccccgtaat
gcgggaaagatcgcccaggcgttccccgaccggatcacctttcaccgggacggatccttt
acactttcgggaccggcttccggatttccggatgatctggccagacttgaagaacttctt
tcgtaa
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