Luteibacter flocculans: IM816_00670
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Entry
IM816_00670 CDS
T08863
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lfl
Luteibacter flocculans
Pathway
lfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IM816_00670 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfl03400
]
IM816_00670 (ligD)
Enzymes [BR:
lfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IM816_00670 (ligD)
DNA repair and recombination proteins [BR:
lfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IM816_00670 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
URL58689
LinkDB
All DBs
Position
complement(162797..165361)
Genome browser
AA seq
854 aa
AA seq
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MSLQDYRRKRNFAKTREPAPEDSARTGRRSIFVVQLHHASRRHFDFRLQVGDVLRSWAVP
KGPSYDPKVKRLAVEVEDHPVSYANFEGDIEEGYGKGHVDLFDRGVWATQGDPEAQLRKG
HLTFELFGDRLKGSWHLVRGAKKERQPAWFLIKAEDAYASDVEADDLLDAKMRESTRRAA
TTSRLRAAAKKSTSRKKAPPTSKTRRMSAASLTKAAAAVPRARKAKADNAFFPPQLARLR
ETPPKGEEWVHEVKWDGYRILTGIADGEVLLWSRNALPWNDRIPEIVQAIKGLGLDSARL
DGELIALDASGRSDFNALQRTLSGEAQAPLVYMLFDMPYLQGYDLSRASLVDRKALLERL
LAHAPKHLAYSAHNVGHGDDVFAMAMDQKLEGIIAKRANGAYRSGRGDDWQKIKRLESDE
FAVVGYTPAKGSRLAFGSLLLAKPDGNDGWIYVGRVGTGFTDEMLRELGETLTKQGSKKP
TVRIDAVDPTLRGALWVAPTAVAEVYYRGIGNKDLLRQPSLKALRTDKSPDDLRDSDRAP
SAPSARKKTRATKASAKVAPADASAVVITHPDRVVFPDDGITKQDVVDYYRAVMPWLLPP
IADRPTSTIRCPGGIGSPCFFQKHVMAGLEHVGTAKLKEETGAQAVYLYPRDEAGLIELV
QFGAVEFHPWGSHVGSPDIADRVVFDLDPGEDVDWRRVVAAARMVRGLLDELGLVSFVRT
TGGKGLHVVVPLNPGADWDTVKTFARGFAEAMAALHPLEFVATATKRFRRGKIYVDYLRN
GRGATAVASYSLRSRPGAPVAVPLRWEELGKVKSGNAFDLRSLPKRLARLKKDPWEGIDE
VRQDLASVSEKLGA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcaggactaccgacgcaagcggaacttcgcaaagacccgtgagcccgccccg
gaggactctgcgcgaacgggcaggcgatcgatcttcgtggtgcagttgcaccacgcgtcg
cggcgacacttcgactttcgtcttcaggtcggtgacgtgttgcgcagttgggcggtgccg
aaagggcccagttacgacccgaaagtgaaacgactcgccgtggaagtcgaagaccacccc
gtgtcttatgccaacttcgaaggcgacatcgaggaaggctacggcaaaggtcacgtcgat
ctcttcgatcgcggcgtgtgggcgacgcaaggcgaccccgaagcgcaattgcgcaagggc
catctcacgttcgagttgttcggcgatcgcctgaaaggcagctggcatctcgtgcgaggc
gctaagaaggagcgccaacccgcctggttcctcatcaaggcggaagacgcttacgccagt
gatgtcgaggcagacgacctgctcgacgcgaagatgcgcgagagcacgcgccgggcggcg
accacgtcgcggcttcgcgcggccgcaaagaagtccacgtcgcgcaagaaggcgccgccg
acgtcgaagacacgacggatgtcggccgcatcgctgacaaaggccgccgctgccgtaccg
cgcgcgcgcaaggcgaaggccgataatgcttttttccctccgcaactcgcccgcctccgc
gagacgccgcccaaaggcgaggagtgggtgcacgaagtgaaatgggatggctaccgcatt
ctcacgggtatcgccgatggggaggtcttgctttggtcgcgcaacgccctgccctggaac
gatcgcattcctgagatcgtgcaagcgatcaagggtcttggcctggacagcgcgcgcctc
gacggcgaactgatcgcgctcgatgcgtctggccgaagcgacttcaatgccctgcagcgc
acgttgtcgggtgaagcacaggcgccgctcgtatacatgctcttcgatatgccctatctc
caaggctacgacctctcgcgcgcgtcgctcgtcgatcgcaaggcattactggaacgcttg
ctggcacacgcgccgaagcaccttgcctacagcgcgcacaacgtcggccatggtgacgac
gtgttcgccatggcgatggatcagaagctcgaaggcatcatcgccaagcgcgcgaatggt
gcctaccgcagcgggcgcggtgacgactggcagaagataaagcgcctcgaaagcgacgaa
ttcgctgtcgtcggctatacgcccgcgaaaggttcacgccttgcattcggctcgctgctg
ctggcgaagccggatggcaatgatggctggatctacgtggggcgcgtcggcacgggattc
accgacgagatgttgcgcgaactcggcgagacgctgacgaagcagggttcgaagaagccc
accgtgcgtatcgacgccgtggacccaaccctgcgcggtgcgctttgggtagcgccaacg
gcggtcgcggaggtctattaccgcggcatcggcaacaaggatttgctgcgccagccgagc
ctgaaagcccttcgtaccgacaagtcgcccgacgaccttcgcgattcggatcgggcgccg
tccgctccttcggcccgaaagaagacgcgtgcaacgaaggcgtccgcaaaagtcgctccc
gccgatgcgagcgcggtggtcatcacgcatcccgatcgtgtcgtcttccccgacgacggc
atcaccaagcaggacgtggtggattactaccgcgccgtgatgccgtggttgctgccaccg
atcgcggatcgacccacgtccaccatccgttgccctggcggcataggctcgccgtgcttt
ttccagaagcacgtcatggcgggactcgaacacgtcggcactgccaagctcaaggaggaa
accggcgcgcaggcggtatacctctatccgcgcgacgaagccggtctcatcgaactcgtg
cagttcggcgcggtggaattccatccctggggttcgcacgtaggttctcccgatatcgcc
gaccgcgtggtcttcgacctcgatcccggggaagacgtggactggcggcgcgtggtggcc
gcagcgcgcatggtgcgcggtctgctcgacgaactgggcctcgtgtccttcgtgcgcacc
accggcggcaagggcttgcacgtggtcgtaccactcaaccccggcgccgactgggacacg
gtgaaaaccttcgcgcgtggcttcgccgaggcgatggcggcgcttcaccccctggaattc
gtcgccacggccacgaagcgatttcggcgcggcaagatctatgtcgattacctgcgaaat
ggccggggcgcgacggccgtggcgtcgtattcgctccgctcgcggccgggcgccccggtg
gccgtgcccctgcgctgggaagagctgggcaaggtgaaatccggcaatgccttcgacctg
cgtagcctgccgaagcggctggcccgcctcaagaaagacccttgggaagggatcgacgag
gtccgccaggacctggcttcggtcagtgaaaagctcggcgcgtga
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