Leptospirillum ferriphilum YSK: Y981_12635
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Entry
Y981_12635 CDS
T03197
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfp
Leptospirillum ferriphilum YSK
Pathway
lfp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y981_12635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfp03400
]
Y981_12635
Enzymes [BR:
lfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y981_12635
DNA repair and recombination proteins [BR:
lfp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Y981_12635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
RecG_dom3_C
nSTAND3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AIA31282
UniProt:
A0A059Y1G2
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All DBs
Position
2255873..2259334
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AA seq
1153 aa
AA seq
DB search
MTLFPKLQKKLLETLSTFVAQKSHRPLNLMGIEEDARSLLPFLSQDLLSDKTLWIIAENI
EKSHNRMSSLLAFQSFFGSSLSICFLPEEEVLPYEPESPPDFIRAERIHALNLLAQGKVD
VVVTTWPAVVRKTLPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVLQVSAPGEFAV
RGAILDLYSPAHQDPVRLEWDDDILASIRSFDINNQKSLAKLSRIEILPGSEWIPPSGKV
QDAALSDWLKSNPVTSLVPGVERFIPSFYDDAKSPLDYGRKPVLLIEEPSLYRLKKKEWE
DRIREGWENLTDSDKALLPSPEKAFLFEGEELPQLIEKLYPTIYLSDFSDQENLPFSSPV
ESLLRIDDSWIEGLSHLIGQTKVVSVFRTRGQRDRFQELLTNQGIPFFPAAGLQDIEEKE
SLNTSAVWTILGDVEKGFYIPSDNVLVLSENFLFRKRPEPRIHRTFATATSIYRKDRPPL
NEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFFVVEYRDFEKLYVPVDQADLLQPYRGPEG
SAPTLDRIGGQTWNRTRQKVRKEIEKISQDLVDLYARRKTVSGHSFSADLLLVREFENSF
PYDLTPDQEDAWRAVSEDMEAPTPMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALLVP
TTLLAKQHYESFLDRFSGFPVRVGHISRMVSQAEIRATRKKLSLGEIDILIGTTALISKE
TTFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQMSLSGLRGISFIM
TPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTISRMVHYLAKLFPGVP
IGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIVNRADMFGISELY
QIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQIAMRDMEIRGAGS
LLGHQQTGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVRIDLGRESRFPEDYIEHP
AQRIDFYRRLSLAKDMGEIDHIESEVSDRFGPLPRSSKGLFLAARLKFLSLKHGFSEVRV
RDRELIVKPSFFGVFTPEKIQTLFNKFEGRLWINPDSTFCLLGSPSTFVNELDLVGHVLS
GNPDFQDICSTHP
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgactctttttcccaaacttcaaaaaaaattactggaaaccctttcaacttttgttgcc
caaaaatcccatcggcctctgaatttaatggggattgaagaagacgcacgctctcttctt
ccctttttaagtcaggatctcttgtccgataaaacactgtggatcattgccgaaaatatc
gaaaaatcccataacaggatgagttctctactcgctttccaaagctttttcggatccagt
ctttccatctgctttcttccggaagaagaagttcttccttatgagccggaaagcccaccc
gattttatacgggcggaaagaatccatgccttgaaccttctggcccaggggaaagtggat
gtcgtcgtcacaacatggccggctgttgtcaggaaaacccttcctcccaggcttctgtca
gaagtcacctggaccttgtctgccggggaattcattgaacggactgctttggccgactct
ctcgtgcgacttggtttcttaagagtgctccaggtttccgccccgggagagtttgctgtc
aggggagcaatcctcgatctttactcaccagcccatcaggatcccgtcagacttgaatgg
gacgatgacattcttgcctctattcggagttttgatatcaacaaccagaaatctctggca
aagctatcaaggatcgaaatccttccgggctctgaatggattcccccttccggaaaagtc
caggacgcagcactctcggattggctcaagagcaatcctgtgacatctctcgtgccaggg
gtcgaacgcttcattccgtccttctatgacgatgccaagtctccgctcgattacggccgg
aaacctgttcttctgatcgaagaaccatctctttaccgactgaagaaaaaagaatgggaa
gacagaatccgggaaggttgggagaacctgacagactcggacaaggctcttctcccttct
ccagaaaaagcctttctgttcgagggggaggaattaccacagctgatcgaaaaactttat
ccgacgatttatttatccgatttttccgaccaggaaaatcttcccttttcttcccctgtt
gaatctctgctccgaatcgacgattcctggattgaaggactttcacatcttatcggacaa
acgaaggtcgtttcggtctttcgcacccgaggtcaacgggacagatttcaggagcttttg
accaatcagggtattccgttctttccggccgccggtctgcaagacatcgaagaaaaagag
tccctcaacacatccgctgtctggacaatattgggagatgtcgaaaaaggattttacatc
ccctcggacaacgttttggtcctgtccgaaaactttctcttcagaaaacgtccagaacct
cgcatccaccgaacttttgcaactgcgacctccatttacagaaaagatcgtccaccccta
aacgagggagaaccggtcgttcacctccaacacggcattggtctctaccgtggtctcaaa
gaaataatggtgggatcaatccccggggaatttttcgttgtcgaatatcgggattttgag
aaactttatgttccggttgatcaggctgacctccttcaaccctacaggggacctgaaggg
tctgctccgactctggacaggattggcgggcaaacctggaacagaacgcggcaaaaggtc
cgaaaggaaatcgaaaaaatctcccaggatctagtcgatttatatgccagaagaaaaaca
gtctccggacattctttttccgctgatcttcttctcgtccgggagtttgaaaattctttt
ccctatgatttaaccccggatcaggaagacgcatggcgcgctgtatctgaagacatggaa
gctcctactcccatggatcggctgattctgggggacgtggggttcggaaaaactgaaatt
gccatgcgtgcagcgtttaaggccgttgccgacggatatcaggtcgctcttcttgtcccc
actactcttttggccaaacagcattatgaatccttcctggacaggttctccggttttccg
gtgcgagtcggccatatttcaagaatggtttctcaggcggaaatccgcgcgacccgcaaa
aaactgtctctgggggagatcgatatcctgatcggaacgacagctttgatcagcaaagaa
acaacgttccggaatctgggtcttttaatcattgacgaagagcaaagatttggggtcggt
cagaaagaaaaactgaaaagccgttatacatctgtcgatgttctcacactctccgcaacc
cccattccccgaacactccaaatgtccttgtccggcttaagggggatcagcttcatcatg
acccctcctcccggcagaaaacctattcggacggcaatcctgaccttcgaccgacaccgg
attcacgaagccatagaccgggaacttgcacgggacggacaagtttttttcattcacaat
cgtgtacagaccatttcgcgaatggtccactatctggcaaagctttttccgggagttccg
attggcatggcccacggacagatggaggactcgagaatggaagaggtcatggaaaaattt
atccaacgccactatcgcattctcgtttcaacagccattgttgaatctggtctcgatatt
cctgccgccaatacaattatcgtcaaccgggcagatatgtttggcatatccgagctctat
caaattcgaggcagagtaggtcgttctggtcagcaggcatatgcctacttcttgatccct
tcggaatccgggctgacggatacagccagaaaacgactcaaaactctccaggacaacaca
agtctcggatcaggataccagatcgccatgagggacatggaaattcggggagctggaagc
ttgctgggtcaccagcaaacagggcatattgctcttgtcggtctggatctgtaccttgaa
atggtggaagaagctattcagtcacgcattgaaccagaagccgttcccttggcacgggaa
gaagtccggattgacctggggagagaatcccgttttccggaggattatattgagcatccg
gcccagaggatcgatttttatcgacggctttctctggctaaagacatgggagagattgac
catattgaatcggaagtatccgatcggtttggtccccttcctcgctcatcaaaagggctc
tttctcgcagcaagactcaaatttctttccctaaaacatgggttttccgaagttcgggta
agagatcgtgaactgattgtgaaaccctctttttttggagtttttaccccggaaaagata
caaacacttttcaataaatttgaaggaagattgtggatcaatccggattcaactttctgc
cttctgggctctccctccacctttgtcaacgaactggatcttgtcggtcatgttctttcc
ggaaaccccgacttccaggacatctgttccacacacccataa
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