Lachnoanaerobaculum gingivalis: QJR73_12905
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Entry
QJR73_12905 CDS
T09491
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lgg
Lachnoanaerobaculum gingivalis
Pathway
lgg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QJR73_12905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgg03400
]
QJR73_12905 (mfd)
Enzymes [BR:
lgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QJR73_12905 (mfd)
DNA repair and recombination proteins [BR:
lgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QJR73_12905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
nSTAND3
MFD_D3
AAA_22
UB2H
ERCC3_RAD25_C
SHP
Motif
Other DBs
NCBI-ProteinID:
WHE87147
LinkDB
All DBs
Position
complement(2743841..2747179)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSLFENPLKRLADFESLEESIKKEKFPVQVSDMSEPGKAHLISELMKEEKAWKLVISYDE
DNASRLYEDIGCFLDEVYLYPARDLLFFTADIRSSQITAKRVEVWKHLREDKSGVIVTTV
DALMDKLEDYHKFCETTLEIKKEDSIDIEEISKKLTDIGYERSFETSNPGQFSIRGGIID
IFPLTEEYPVRIELWDDEIDAMKSFNPASQRSIDELDYVNIYPAREKVLGGEQSFLRYFD
YKNTLIYIDEPARTMDKARKTEDEYNQSAAGRIESGQYKKEDIPDIFGADEVFHSLNKAP
SIALTGLDNRIKELEIKAMYSVFSRMSGVYHEDFTNLVDDLKKYRSDKTRVALVCASKTR
AKRLADSFRNDYSLDAFFSEGEKDVSIAPGQIAIFVGNIHSGFEYPAINFALISETDIFK
TPRKKKRREKEYEGDRVTSLSELHIGDYIVHEDHGLGIYKGIEKIERDDVIKDYVKIEYQ
GGDNCFVPVSKLNRIQKYGSGEIKKPKLNKLGGVEWSKTKSRVKTEVEEMAKELVELYAA
RLKGQGVFYGEDTLWQREFEEMFEYEETYDQIKAIEDAKRDLESGKIMDRLICGDVGYGK
TEIALRIAFKVIQEGYQVLYLVPTTILARQHYNTFVQRMKDFPVKIGLLSRFNTKKEQNQ
TVSDLEKGLVDIVIGTHRLLSKDVVPKKLGLVIVDEEQRFGVRHKEKLKQLCENVNVLTL
TATPIPRTLHMSLSGIRDLSVLEEPPVDRKPIQTYVMEYHDETVKEAIRREVARGGQVYY
LYNRVNNIEEVAAHVRALLPDINVEYVHGRMDERHLEERMVDFINGDVDVLVTTTIVETG
LDVPNANTIIVHDADRLGLSQLYQLRGRVGRSKRSAYAFLMYTRNKLLSEEASKRLKAIR
EFTELGSGIKIAMRDLEIRGAGNVLGVTQHGHMEEVGYDLYVKLLNTAVRALKTGKPVEE
EVEASVEIDSSAYIPSSYISNEETKLEIYKKIALVKTEEDFLDMQDELIDRFGEMPKSVA
NLLYVARIKALASSMFITDIIVNKLQIKWTMRENKDIKMDNLDAFLKSFGKNLSVKYDKV
LNWEYRDKEKISTEYRMEFAISLLERQKEELF
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttgaaaatcccttaaaaagattagcggattttgaatctttagaagaaagt
ataaaaaaagaaaaattcccggtacaagtcagtgatatgtctgagccgggaaaagcacat
ctgatttccgagctgatgaaagaagaaaaggcttggaaacttgttatatcatatgatgag
gacaatgcaagcaggctatatgaagatataggctgctttttggacgaggtttacctgtat
cctgcaagggatcttttgttttttacggcagatataagatcctcacagataacagcaaaa
agggtggaagtatggaaacatttaagagaagataagagcggagtcatagtaacaactgtg
gatgctcttatggataaacttgaagattatcataagttttgcgaaaccactttggagata
aaaaaggaagattctatcgatatagaagagatatcaaaaaagctgacggatataggctat
gagagaagctttgaaacaagcaatcccggacagttttccataagaggtggaataatagat
atttttccgcttactgaagaatatcctgtaagaatagaactttgggatgatgaaatagat
gctatgaaaagcttcaatcccgcaagtcaaagatcaattgatgagctggattatgtaaat
atctatccggcaagagaaaaggtacttggaggtgaacagtcatttttaagatattttgat
tataaaaatactcttatatatattgatgagcctgcaagaacaatggacaaggcaagaaaa
acggaggatgaatataatcaaagtgcagcgggaagaatagaatcggggcagtacaaaaaa
gaggatattcccgatatattcggagcggatgaggtgtttcacagcttaaataaagcgccg
agtattgcacttacagggcttgataacagaataaaggaattggaaatcaaagcaatgtac
tcggtgttttcaagaatgagcggagtatatcatgaagattttacaaatcttgtggatgat
ttgaaaaagtacaggtctgataaaaccagagttgctcttgtttgtgcctcaaagaccaga
gcaaagagacttgccgacagctttagaaatgattattctttggatgctttcttttcggaa
ggggaaaaagatgtaagtatcgctccgggacagattgcaatatttgttgggaatattcac
tccggctttgaatatccggcgatcaattttgcgctgatttcggaaacggatatttttaaa
actcctaggaagaaaaagagaagagagaaagaatatgagggtgacagagtaacctcatta
agcgaattgcatataggtgattatatagtacatgaagatcatggtcttggaatctataaa
ggtatagaaaagatagaaagagacgatgtaattaaggactatgtaaagatcgaatatcag
ggtggtgacaactgctttgtaccggtttcaaagctgaacagaatacaaaaatacggcagc
ggagaaataaaaaagcctaaactcaataagcttggtggagtggagtggagcaagaccaaa
tcaagagtaaagactgaagttgaagagatggctaaagagcttgtggaactctatgccgcc
agacttaaaggacagggtgtattttatggcgaggatactctttggcaaagagagtttgaa
gaaatgtttgagtatgaggagacatatgatcagataaaagccatagaggatgctaagaga
gatttggagagcggaaagataatggatcgtctgatatgcggagatgtgggatatggtaag
accgagattgccttaagaattgcatttaaggtaatacaggaaggatatcaggtactttac
cttgttccgacaactattcttgcaagacagcattacaatacatttgttcagagaatgaaa
gattttcctgtaaaaataggtttgctttcaagatttaatacaaagaaagagcagaatcag
actgtcagtgatctggaaaaagggcttgtggatatagtgataggaactcacagactttta
tcaaaggatgtagtgccgaaaaaactcggacttgtaatagtggatgaggagcaaagattc
ggtgtaaggcataaggagaaattaaagcagctttgtgagaatgtaaatgtgcttacgctt
accgcaacaccgatacccagaactcttcatatgtcactttcaggtatcagagatctgtcg
gtattggaagagccgcctgttgacagaaagccgatacagacctatgtaatggagtatcat
gatgagacggttaaagaggctatcagaagagaggttgccagaggcggtcaggtgtactat
ctgtataacagagtcaacaatatagaagaagttgccgcacatgtcagagcactcttacct
gatataaatgtggaatatgtgcatggaagaatggacgagagacatttggaagaaagaatg
gtcgattttatcaatggtgatgtcgatgtattggtgaccacaaccatagtggagacaggc
cttgatgttccgaatgccaataccataatcgttcatgatgcggacagacttggactctca
cagctttatcagcttagaggtagagtcggaagaagcaaaagaagtgcctatgccttcctt
atgtacacaagaaataaacttttgtccgaggaagcttcaaagagacttaaggcaataaga
gagtttacggaactcggttccggaataaagattgcgatgagagatcttgagataagagga
gccggaaacgttcttggtgtgacacagcatggtcatatggaagaggtgggatatgacctg
tatgtgaaacttttaaacactgcagtcagagctttaaagacaggaaagcctgtggaagag
gaagtggaggcaagtgtggagatagacagtagtgcctacattccaagcagctatatttca
aatgaagagacaaaacttgagatatataaaaagatagcattggtaaaaaccgaggaggat
ttccttgatatgcaggatgagcttatagacagattcggtgagatgccgaagtctgttgcc
aatcttttgtatgtcgcaagaataaaggctctggcaagcagtatgtttataacagatatt
attgtgaacaagttgcagataaagtggacaatgagagaaaataaggatataaaaatggat
aacctggatgctttcttaaagtctttcggaaagaatttgtctgtaaaatacgataaggta
ttgaactgggagtatagggataaggagaaaatctcaaccgagtacaggatggaatttgct
ataagtttgcttgaaaggcagaaagaggaattgttttag
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