KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_138363
Entry
LOTGIDRAFT_138363 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K12878  THO complex subunit 1
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03013  Nucleocytoplasmic transport
lgi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LOTGIDRAFT_138363
  09122 Translation
   03013 Nucleocytoplasmic transport
    LOTGIDRAFT_138363
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_138363
   03041 Spliceosome [BR:lgi03041]
    LOTGIDRAFT_138363
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     LOTGIDRAFT_138363
Spliceosome [BR:lgi03041]
 Complex C
  Other components
   EJC/TREX
    LOTGIDRAFT_138363
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    LOTGIDRAFT_138363
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 20234044
NCBI-ProteinID: XP_009046859
JGI: 138363
UniProt: V4AY23
LinkDB
Position
Unknown
AA seq 465 aa
MNYFVDICTTTVPFQMLADMFDMLTLEKSEQVFSIVEENVNVWKSAGFYDAGKNFLLRMC
NDLIRRLSKSQNTVFCGRIQLFLSRLFPLSERSALNLMSQFNLDNVTIFNTHGDESKFKT
VSHHDSTQEFMEIEEGEMADFPSSSFPIDYNLYKRFWSLQDYFRKPLQCYEKSSWKTFVS
HADEVLKAFDSCKLDDLKSQRKKLDHSKQMDTQTFFAKYLTSEKLLDLQLSDSNFRRYVL
VQFLIVFQYLNAQVKFKSASQTLTDDQTAWIKTATEKVTSLIKETPPDGDKFAESVDHIL
QREENWNNWKNEGCISYVREKLSQEKEPTEKARVRAKRKRVGDDLMASSGKINMGSPELT
RLWNINANNMEACKADSRIFLPNINEYFAEAIDQADPDAMIEDEYILLNKPYFQWRSLRL
LARRSPHFFTQLNPPFIPLNKYLEIMVNKIAQDMPVSFYHTILCE
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgaactattttgtagatatttgtacaactacagtaccatttcaaatgttagctgatatg
tttgatatgcttactctagaaaaatcagaacaagtatttagtattgttgaagaaaatgtt
aatgtttggaaatcggctgggttttatgatgctggtaaaaatttcctattaagaatgtgt
aatgatttaatccgtcgattatctaagtctcagaatacagtattttgtggaagaattcag
ttatttctgtctcgtctatttcctttatctgaaagatctgctttgaatctaatgagtcag
tttaatttagataatgtaactatatttaatactcatggtgatgaaagtaaattcaaaact
gtaagtcatcatgatagtacacaagaatttatggaaatagaagaaggtgaaatggctgat
tttccttcaagttcatttcctatagattacaacctatacaaaagattttggtcattacaa
gattattttcgtaaaccactacaatgttatgaaaaatcatcttggaagacatttgtatca
catgcagatgaagtattaaaggcatttgatagttgtaaattagatgatttgaaatctcaa
cgtaaaaaacttgatcattccaaacaaatggatacacaaacattctttgcaaagtatctc
actagtgagaaattattagatctacagttatcagacagtaattttagaagatatgtttta
gttcagtttcttattgtatttcaatatctgaatgctcaagttaaattcaaaagtgccagt
caaacattaacagatgatcaaacagcctggatcaagacagctacagagaaagtaacgagt
ttaattaaagaaactccaccagatggcgacaagtttgctgaatcagttgatcatatactt
caacgtgaagaaaactggaataattggaaaaatgaaggttgtattagttatgtcagagaa
aaattaagtcaagaaaaagaacctactgaaaaagctagagttagagcaaaacgaaagaga
gtaggagatgatttaatggctagtagtggtaagataaatatgggtagtccagaattaacc
aggctgtggaatattaatgctaataatatggaagcttgtaaggctgactctcgtatattt
ctaccaaatattaatgaatattttgctgaggctattgaccaagcagatcctgatgccatg
atagaagatgaatacatattgttgaacaagccttattttcaatggagatcactacgatta
ttagctagaagatcaccccatttctttactcaacttaatcctccttttataccattgaat
aaatatctggagatcatggtgaataaaatagcacaagacatgcctgtaagtttttatcat
accatattgtgtgagtag

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