Lactococcus garvieae ATCC 49156: LCGT_0390
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Entry
LCGT_0390 CDS
T01618
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lgr
Lactococcus garvieae ATCC 49156
Pathway
lgr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCGT_0390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgr03021
]
LCGT_0390
03400 DNA repair and recombination proteins [BR:
lgr03400
]
LCGT_0390
Enzymes [BR:
lgr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCGT_0390
Transcription machinery [BR:
lgr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCGT_0390
DNA repair and recombination proteins [BR:
lgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCGT_0390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
BAK57903
LinkDB
All DBs
Position
401431..405021
Genome browser
AA seq
1196 aa
AA seq
DB search
MAGHDVKYGKHRTRRSFSRIKEVIGLPNLIEVQTASYQNFLDEGLANVFKEMFPIDNFAG
TMELEFVGYEMKAPKYTVDEARAHDANYSAPIHVTFRLVNKETGELKTQEVFFGDFPLMT
EMGTFINNGSERLIVSQLVRSPGSYFHLKTDKNGLESYGHTTIPNRGAWFELDTDAKGVG
YVRIDRTRKLTFTTMLRALGFGSDDEILELMGPSELLNTTLGKDVHKNPSDTRVEEALKD
IYDRLRPGEPKTADSSRGLLIARFFEPRRYDFAPVGRYKFNKKLALKNRILGLTLAEPIV
DPETGEILVESDTLVTRDVLDSIENLLDNGLNTTVYQPSDDAVIPEPIELQTLKVYSPKD
PERVVTLISNGQIPAENRVLMPADVIANINYWLGLSEGIGKVDDIDHLGNRRIRSVGELL
QNQVRIGLSRMERVIRERMSSSENENMTPQGLINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRFSALGPGGISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAK
INEYGFIMSPYRRIDRATGTVTDEVEYLTADEEDNYTVAQANSPLTDDNKFVNDTVMARH
VGNNIEVDASTADYMDVSPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
WIGTGMEHQTARDSGAAVIAKHDGTVEYVDADEIRVRRTSGELDIYNIMKYRRSNSGTSY
NQRPLAELGDKVEAGDIIGDGPSMENGEMALGQNPLVAYMTWEGYNFEDAIIMSERLIKD
DVYTSIAIEEYESETRDTKLGPEEITREIPNIGDEALKNLDEDGIIRIGAEVEDGDLLVG
KVTPKGETDPTPEERLLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSG
VNKLVRVFISQKRKIHVGDKMAGRHGNKGVVSNIVPVEDMPYLPDGTPIDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIASPVFDGASDEDIWNTVKEAGMAEDAKTVLYDGRTGE
AFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKPGLPESFRVLVKELQALGMDLKV
LDGEKNVLDLRELDDEIEVRQENIDITPEMLEAQEQIVTEAVETEQALISEAKEEK
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgtaaaatacggtaaacaccgtacaagacgcagtttttcacgaatc
aaagaagtaattggtttgccgaacttgatcgaagttcaaacagcaagttaccaaaacttc
cttgacgaaggtttggctaacgtcttcaaagaaatgtttccaattgacaactttgcgggc
acaatggagcttgaatttgttggatatgaaatgaaagcccctaaatacactgtggatgaa
gcccgtgctcacgatgcaaactattctgcaccgattcatgtgactttccgccttgtaaat
aaagaaacaggcgaattgaaaacacaagaagttttcttcggtgatttcccacttatgact
gagatgggtaccttcatcaataacggttctgaacgtttgatcgttagccagttggtacgt
agcccaggttcatacttccaccttaaaacagataaaaatggtctggaatcttatggtcat
acaacgattcctaaccgtggtgcgtggtttgaattagatacagacgctaaaggtgttggt
tatgtacgtatcgaccgtacacgtaagttaacatttacaacaatgttgcgtgcacttggt
tttggtagtgacgatgaaattcttgaacttatgggaccaagcgaactcctcaatacaaca
ttgggcaaagatgttcacaaaaacccatcagacactcgtgttgaagaagcacttaaagat
atctatgaccgcctccgtcctggtgagcctaaaacagcggacagctctcgtggactttta
attgcacgtttctttgagccacgtcgctacgactttgcacctgtaggtcgctataaattt
aataagaagcttgcgcttaaaaaccgtatcctcggtttgactttggcagagccaatcgtt
gaccctgaaacaggcgaaattctcgttgaatcagatacactcgtaacacgtgacgtttta
gattctatcgaaaaccttttggataatgggctcaatacaacagtttatcaaccctctgac
gatgctgttattcctgaaccaattgaacttcaaaccttgaaagtttactctccaaaagat
ccagaacgtgtcgtaacattgatttctaacggtcaaattcctgcagaaaatcgtgtattg
atgccagcagacgtgattgctaacatcaactactggttaggtctttctgaaggcattggt
aaagttgacgatatcgaccacttaggaaaccgtcgtatccgttcagttggtgaattgctt
caaaaccaagtgcgtatcggtctttcacgtatggaacgtgttatccgtgaacgtatgtca
tcttctgaaaatgaaaatatgacacctcaaggattgattaacattcgtcctgtaacagct
gcaatcaaagaattctttggttcttcacagttgtcacaatttatggaccaacacaatcct
ttgtcagagctttcacacaaacgccgtttctctgccttaggtcctggtggtatctcacgt
gaccgtgcttcatatgaagtacgtgacgtacactacactcactatggccgtatgtgtccg
attgaaacacctgagggtccaaatatcgggttgatcaacaacttgtcatcttatgccaaa
atcaatgaatatggtttcatcatgtcaccataccgtcgtattgatcgtgcaacgggaaca
gttacggatgaagtagagtatctaacagctgacgaagaggacaactatacagttgcccaa
gctaactcaccattgactgatgacaacaaatttgtcaacgacactgtaatggcccgtcac
gtgggtaacaatattgaagttgatgcttcaactgcggactatatggacgtttcacctaaa
caggttatcgccgtagcagccgcttgtattcctttcttggaaaatgatgactccaaccgt
gcccttatgggtgccaatatgcaacgtcaagccgttccattgattgatccacatgcacct
tggattggtacaggtatggaacatcaaacagcacgtgactcaggtgctgctgtgatcgct
aaacatgacggtactgttgaatatgtagatgctgacgaaatccgtgtacgtcgtacatca
ggtgagcttgatatctataacatcatgaaataccgccgttcaaactctggaacttcatat
aaccaacgtccacttgcggaacttggtgataaggttgaagcaggcgacatcattggtgat
ggcccatcaatggagaatggggaaatggcgcttggtcaaaacccactcgttgcttatatg
acttgggaaggttataacttcgaggatgccatcatcatgtctgaacgtttgattaaagat
gacgtttatacatctattgctatcgaagaatatgaatcagaaacacgcgatacaaagctt
ggccctgaagaaattacacgcgaaattccaaatattggtgatgaagccctcaaaaacttg
gacgaagacggtatcatccgtattggtgctgaggttgaagatggagacttgctcgttggt
aaagtcacaccaaaaggtgaaactgatccaacacctgaagaacgtcttcttcgtgccatc
tttggtgaaaaagcgcgtgaagttcgtgatacatcactccgtgtaccacacggaggtggc
ggtatcgtccacgatgtgcgtgtctttacacgtgaaaatggtgatgagttgccatcaggt
gtgaacaagttggtccgtgtcttcatctcacaaaaacgtaaaatccacgttggggataag
atggccggacgtcacggtaacaagggtgtcgtttcaaatatcgttcctgtagaggatatg
ccttacttaccagacggtacaccaatcgatatcatgttgaatccattgggtgtcccttct
cgtatgaatatcggacaagttatggagcttcacttaggtatggctgcacgtacattgggt
attcacattgcatcaccggtcttcgatggtgcaagcgatgaagatatctggaacacagtg
aaggaagctgggatggctgaagatgccaaaacagtactttatgacggacgtacaggtgaa
gcctttgataaccgtatctctgtcggtgtcatgtacatgatcaaacttcaccacatggtt
gatgataaacttcacgcacgtagtgttggtccttactcactcgttacacaacaaccgctc
ggtggtaaagcacagttcggtggacaacgtttcggggaaatggaagtttgggcccttgaa
gcatatggtgctgcgaatgttctccaagaaatcttgacttacaagtcagatgatgtgatt
ggacgtacccgtgcctatgaagcgatcgtgaaaggtgaacgtattcctaaaccaggtctt
cctgaatcattccgtgtccttgtaaaagaattgcaagcacttggtatggatcttaaagtc
ctcgatggtgagaaaaacgtccttgatcttcgtgaactggatgatgaaatcgaagttcgt
caagaaaatattgacattacgccagaaatgcttgaagctcaggaacaaattgttactgaa
gcagtggaaactgaacaagcattgattagcgaagcaaaagaagaaaaataa
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