Lysobacter gummosus: LG3211_2416
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Entry
LG3211_2416 CDS
T04163
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LG3211_2416 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgu03400
]
LG3211_2416 (ligD)
Enzymes [BR:
lgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LG3211_2416 (ligD)
DNA repair and recombination proteins [BR:
lgu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LG3211_2416 (ligD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALN91383
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All DBs
Position
2644587..2647184
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AA seq
865 aa
AA seq
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MSLRDYVRKRRLGVTPEPAAEAGAKRSRKRRGEPIFVVQLHHARARHYDFRLEADGALKS
WAVPKGPSMRAGERRLAVEVEDHPLDYADFHGDIPQGHYGAGHVDIFDRGVWRTDGDALE
QIGAGKLDFSLQGEHLRGAFTLVRTKPSGRQRQWLLIKRNDEHARDCDADGILRETAAKP
ARAAKADASAGKRKATARKNRSSPKAVVASAAAAKTKQPARPSPRDGWRKTALALDGAKA
AAMPDQIELQLATLREHPPAGEGWLHEVKWDGYRLLAYRQRRLRLESRNRQDWTERFPHL
AEALRALPVRSLIVDGELIAPGRDGHSDFGQLQCLLESGQVQALRYVLFDLLYLDGIDLR
GAAQSRRRDLLRELLATSDSPALAFSEHVEGAAGEVLAASARAGLEGIISKRADAPYRGG
RTQAWIKLKHVADEEFIVVGHTPPKNSRQGFGSLLLAQPGKDGLEYVGRVGSGFDDATLR
SLTRRLKTLHRAEPTLALPAHVPFPSRQVRWVEPELVVDVHSRGRGKEGLVRQASFMRLR
EDKRAADLSAALAGAGRTTRSAKQAPAASSGRATKQESKMAHTHITHPERIVFPDPGISK
GEVADYYRAVERWLLPELIDRPISLLRCPDGIASQCFFQKHHSDSFGPHVHAVNLRESSG
KADYVYVRDIEGVMALVQMNTLEFHPWGARRDKPDRPDRIVFDLDPAEGLAWSEIKRAAR
EVRDRLSEIGLDSWVRLSGGKGVHVCVPIRRGPDWARVKAFSEAFAGAMVEQSPLRYLAT
ASKAARKDRIFIDWLRNARGATSVTSWSLRARSGAPVAMPLRWDEFGRSRASTDFDLAKA
KRRASRLSSDPWEGFAQAEQTLPDL
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcgcgactacgtgcgcaagcgccgcttgggcgtcacgccggaaccggcggcg
gaggcgggcgccaagcgctcgcgcaagcgccgcggcgagccgatcttcgtcgtgcaactg
caccatgcccgcgcgcgccactacgacttccgcctggaagccgacggcgcgctcaagagc
tgggcggtgccgaaggggccgtcgatgcgcgccggcgagcgccggctggcggtcgaggtc
gaggatcatccgctcgattacgccgacttccacggcgatattccgcaaggccactatggc
gccggccatgtcgatatcttcgatcgcggcgtgtggcgcaccgatggggacgcgctcgaa
cagatcggcgcgggcaagctggatttctcgctgcagggcgaacacttgcgtggcgccttc
accctggtgcggaccaaaccctccggacgccagcggcagtggctgttgatcaagcgcaac
gacgaacatgcgcgcgactgcgatgcggacgggattctgcgcgagactgcggcgaaaccg
gctcgcgccgccaaggcggatgcgagcgcggggaaacgcaaggcgaccgcacgcaagaac
cgatccagccccaaggccgttgtagcgtccgccgctgcggcgaaaacgaaacaacccgcg
cggccatcgccccgcgacggttggcgcaagaccgcgctcgcgctcgacggcgccaaggcc
gcggcgatgcccgatcagatcgaattgcaactggcgaccctgcgcgaacatccgccggca
ggcgagggttggctgcacgaggtcaagtgggacggctaccgtctgcttgcctatcgccag
cgcagactgcgcctggaatcgcgcaaccgccaggactggaccgaacgcttcccgcatctg
gccgaggctttgcgcgcattgccggtgcgcagcctgatcgtggacggcgaactgatcgcg
cccggccgcgatggccacagcgacttcggccaattgcagtgcctgctcgaatccgggcag
gtgcaggccttgcgctacgtgctgttcgatctgctgtacctggacggcatcgacctgcgc
ggcgcggcgcaatcgcgacgccgcgatctgttgcgcgagttgctggcgacttcggattcg
ccggcgctggcgttcagcgaacacgtcgaaggcgcggccggcgaggtgctggcggccagc
gcccgcgccggcctggaaggcatcatcagcaagcgcgccgacgcgccgtatcgcggcgga
cgcacgcaggcctggatcaagctcaagcatgtcgccgacgaagaattcatcgtggtcggg
cacacgccgccgaagaacagccggcaagggttcggttcgttgctgctggcgcaaccgggt
aaagacgggctggagtacgtcggcagggtcggcagcggattcgacgacgccacgctgcgc
tcgctgacgcgacggctcaagaccctgcatcgcgcggaaccgacgctggccctgccggcg
cacgtgccgttcccgtcgcggcaggtgcgctgggtcgagccggaactggtcgtggatgtg
cattcgcgcggacgcggcaaggaagggctggtccgccaggccagtttcatgcggttgcgc
gaggacaagcgcgcggccgatctgagcgcggcgttggccggagcggggcggacgacccgc
tccgcgaagcaggcgcctgctgcatcatcgggccgcgcaacgaagcaggagtcgaagatg
gcgcacacccacatcacccaccccgagcgcatcgtgttccccgacccgggcatcagcaag
ggcgaggtcgccgactactatcgcgcggtcgagcgctggctgctcccggagctgatcgac
cggccgatctcgttactgcgttgtcccgacggcatcgcctcgcagtgttttttccagaag
caccatagcgacagtttcggcccgcacgtgcatgcggtgaatctgcgcgagtccagcggc
aaggccgattacgtctatgtgcgcgacatcgagggcgtgatggcgctggtgcagatgaac
accctggaattccatccctggggcgcgcgccgcgacaagccagaccggcccgatcggatt
gtgttcgatctcgatccggccgaaggcctggcctggagcgagatcaagcgcgcagcgcgc
gaggtgcgcgaccgcctcagcgagatcggcctggacagttgggtgcggctgtccggcggc
aagggcgtgcatgtgtgcgtgccgattcgccgcgggccggactgggcccgggtcaaggcc
ttcagcgaggccttcgccggagcgatggtcgaacaatcgccgctgcgttacctcgccacc
gcgtccaaggccgcgcgcaaggaccgcatcttcatcgactggctgcgcaacgcccgcggc
gcgaccagcgtcaccagttggtcgttgcgcgcgcgcagcggcgcaccggtggcgatgccg
ctgcgctgggacgaattcggccgcagccgtgcctcgaccgatttcgatctggccaaggcc
aagcgccgcgcttcgcgcctgagcagcgatccctgggaaggcttcgcccaggccgaacag
acgttgccggacttgtaa
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