KEGG   Lysobacter gummosus: LG3211_2416
Entry
LG3211_2416       CDS       T04163                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lgu  Lysobacter gummosus
Pathway
lgu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LG3211_2416 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgu03400]
    LG3211_2416 (ligD)
Enzymes [BR:lgu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LG3211_2416 (ligD)
DNA repair and recombination proteins [BR:lgu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LG3211_2416 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: ALN91383
LinkDB
Position
2644587..2647184
AA seq 865 aa
MSLRDYVRKRRLGVTPEPAAEAGAKRSRKRRGEPIFVVQLHHARARHYDFRLEADGALKS
WAVPKGPSMRAGERRLAVEVEDHPLDYADFHGDIPQGHYGAGHVDIFDRGVWRTDGDALE
QIGAGKLDFSLQGEHLRGAFTLVRTKPSGRQRQWLLIKRNDEHARDCDADGILRETAAKP
ARAAKADASAGKRKATARKNRSSPKAVVASAAAAKTKQPARPSPRDGWRKTALALDGAKA
AAMPDQIELQLATLREHPPAGEGWLHEVKWDGYRLLAYRQRRLRLESRNRQDWTERFPHL
AEALRALPVRSLIVDGELIAPGRDGHSDFGQLQCLLESGQVQALRYVLFDLLYLDGIDLR
GAAQSRRRDLLRELLATSDSPALAFSEHVEGAAGEVLAASARAGLEGIISKRADAPYRGG
RTQAWIKLKHVADEEFIVVGHTPPKNSRQGFGSLLLAQPGKDGLEYVGRVGSGFDDATLR
SLTRRLKTLHRAEPTLALPAHVPFPSRQVRWVEPELVVDVHSRGRGKEGLVRQASFMRLR
EDKRAADLSAALAGAGRTTRSAKQAPAASSGRATKQESKMAHTHITHPERIVFPDPGISK
GEVADYYRAVERWLLPELIDRPISLLRCPDGIASQCFFQKHHSDSFGPHVHAVNLRESSG
KADYVYVRDIEGVMALVQMNTLEFHPWGARRDKPDRPDRIVFDLDPAEGLAWSEIKRAAR
EVRDRLSEIGLDSWVRLSGGKGVHVCVPIRRGPDWARVKAFSEAFAGAMVEQSPLRYLAT
ASKAARKDRIFIDWLRNARGATSVTSWSLRARSGAPVAMPLRWDEFGRSRASTDFDLAKA
KRRASRLSSDPWEGFAQAEQTLPDL
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgagcctgcgcgactacgtgcgcaagcgccgcttgggcgtcacgccggaaccggcggcg
gaggcgggcgccaagcgctcgcgcaagcgccgcggcgagccgatcttcgtcgtgcaactg
caccatgcccgcgcgcgccactacgacttccgcctggaagccgacggcgcgctcaagagc
tgggcggtgccgaaggggccgtcgatgcgcgccggcgagcgccggctggcggtcgaggtc
gaggatcatccgctcgattacgccgacttccacggcgatattccgcaaggccactatggc
gccggccatgtcgatatcttcgatcgcggcgtgtggcgcaccgatggggacgcgctcgaa
cagatcggcgcgggcaagctggatttctcgctgcagggcgaacacttgcgtggcgccttc
accctggtgcggaccaaaccctccggacgccagcggcagtggctgttgatcaagcgcaac
gacgaacatgcgcgcgactgcgatgcggacgggattctgcgcgagactgcggcgaaaccg
gctcgcgccgccaaggcggatgcgagcgcggggaaacgcaaggcgaccgcacgcaagaac
cgatccagccccaaggccgttgtagcgtccgccgctgcggcgaaaacgaaacaacccgcg
cggccatcgccccgcgacggttggcgcaagaccgcgctcgcgctcgacggcgccaaggcc
gcggcgatgcccgatcagatcgaattgcaactggcgaccctgcgcgaacatccgccggca
ggcgagggttggctgcacgaggtcaagtgggacggctaccgtctgcttgcctatcgccag
cgcagactgcgcctggaatcgcgcaaccgccaggactggaccgaacgcttcccgcatctg
gccgaggctttgcgcgcattgccggtgcgcagcctgatcgtggacggcgaactgatcgcg
cccggccgcgatggccacagcgacttcggccaattgcagtgcctgctcgaatccgggcag
gtgcaggccttgcgctacgtgctgttcgatctgctgtacctggacggcatcgacctgcgc
ggcgcggcgcaatcgcgacgccgcgatctgttgcgcgagttgctggcgacttcggattcg
ccggcgctggcgttcagcgaacacgtcgaaggcgcggccggcgaggtgctggcggccagc
gcccgcgccggcctggaaggcatcatcagcaagcgcgccgacgcgccgtatcgcggcgga
cgcacgcaggcctggatcaagctcaagcatgtcgccgacgaagaattcatcgtggtcggg
cacacgccgccgaagaacagccggcaagggttcggttcgttgctgctggcgcaaccgggt
aaagacgggctggagtacgtcggcagggtcggcagcggattcgacgacgccacgctgcgc
tcgctgacgcgacggctcaagaccctgcatcgcgcggaaccgacgctggccctgccggcg
cacgtgccgttcccgtcgcggcaggtgcgctgggtcgagccggaactggtcgtggatgtg
cattcgcgcggacgcggcaaggaagggctggtccgccaggccagtttcatgcggttgcgc
gaggacaagcgcgcggccgatctgagcgcggcgttggccggagcggggcggacgacccgc
tccgcgaagcaggcgcctgctgcatcatcgggccgcgcaacgaagcaggagtcgaagatg
gcgcacacccacatcacccaccccgagcgcatcgtgttccccgacccgggcatcagcaag
ggcgaggtcgccgactactatcgcgcggtcgagcgctggctgctcccggagctgatcgac
cggccgatctcgttactgcgttgtcccgacggcatcgcctcgcagtgttttttccagaag
caccatagcgacagtttcggcccgcacgtgcatgcggtgaatctgcgcgagtccagcggc
aaggccgattacgtctatgtgcgcgacatcgagggcgtgatggcgctggtgcagatgaac
accctggaattccatccctggggcgcgcgccgcgacaagccagaccggcccgatcggatt
gtgttcgatctcgatccggccgaaggcctggcctggagcgagatcaagcgcgcagcgcgc
gaggtgcgcgaccgcctcagcgagatcggcctggacagttgggtgcggctgtccggcggc
aagggcgtgcatgtgtgcgtgccgattcgccgcgggccggactgggcccgggtcaaggcc
ttcagcgaggccttcgccggagcgatggtcgaacaatcgccgctgcgttacctcgccacc
gcgtccaaggccgcgcgcaaggaccgcatcttcatcgactggctgcgcaacgcccgcggc
gcgaccagcgtcaccagttggtcgttgcgcgcgcgcagcggcgcaccggtggcgatgccg
ctgcgctgggacgaattcggccgcagccgtgcctcgaccgatttcgatctggccaaggcc
aagcgccgcgcttcgcgcctgagcagcgatccctgggaaggcttcgcccaggccgaacag
acgttgccggacttgtaa

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