Lactococcus garvieae Lg2: LCGL_0225
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Entry
LCGL_0225 CDS
T01963
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lgv
Lactococcus garvieae Lg2
Pathway
lgv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCGL_0225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgv03019
]
LCGL_0225
03009 Ribosome biogenesis [BR:
lgv03009
]
LCGL_0225
Enzymes [BR:
lgv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCGL_0225
Messenger RNA biogenesis [BR:
lgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCGL_0225
Ribosome biogenesis [BR:
lgv03009
]
Prokaryotic type
rRNA helicases
LCGL_0225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BAK59685
UniProt:
F9VBI4
LinkDB
All DBs
Position
227331..228935
Genome browser
AA seq
534 aa
AA seq
DB search
MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI
EKINPENKAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKALRSGA
HIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPAERQTLLF
SATMPNDIKKIGVKFMKNPEHIKVAAKEMTADRIDQYFIKTKEFEKFDVLTRLLDVERPE
LAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLDILVATDVAA
RGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTKK
EMKGMRPPTKEDAYQASLSVAMDEIKRDLQDGSLKGKLTKFDADAEQLLAEYDVKELVAM
LIQSRVKDPDTMPEVQITAERPLPFNGEGKGFKGKGGGRYGRDRNNNNRGGREGDRDGKG
GYRGKGGDRDRDDKKRNWRDRDDKKRDYYKKDRKPKTQGSEKQAGFVMRNRGDK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattcaacgaactcggcctttcagaaggcattgtcgagacgcttacagctatcggt
tatgagcaaccaacgcccatccaagagcaaacgattcaactcgcgctctcaggacgtgac
gttcttggacaagctcaaacaggtactggtaaaacagccgcttttggccttccaacaatc
gaaaaaattaatccagaaaataaagcgattcaagctcttgtaatcgcaccaacacgtgaa
cttgctgttcaagggcaagaagaacttttccgctttggtaaatctaaaggacttaaagtc
cgcactgtttttggtggttcaagcatcgaaaaacaaatcaaagctctgcgctcaggtgca
cacatcgttgtcggtacaccaggacgtatggtggatttgcttaaacgtaaagcacttgac
ctttcacatcttgaaacattgattcttgatgaagcagatgaaatgcttaacatgggcttc
cttgaggatatcgaattcatcatcggtaaaacaccagcagaacgtcaaacattgctcttc
tcagcaactatgccaaatgacatcaaaaaaattggtgtcaaattcatgaagaatccagag
catatcaaagttgcggctaaagaaatgaccgctgatcgtatcgatcaatactttatcaag
acaaaagaatttgaaaaatttgacgtcttgacacgcttgcttgatgttgaacgtccagaa
ctcgctattgtctttggacgtacaaaacgccgtgtggatgaaatcacacgtggtttgaaa
ttacgtggttatcgtgccgaaggtattcacggtgacttggaccaaaacaaacgtttacgc
gtgttacgtgattttaaaggtggccacttggacatcttggttgctactgacgttgcagcc
cgtggacttgacatctcaggtgtaacccacgtttacaactacgacattacgcaagaccaa
gaaagctacgttcaccgtattggacgtaccggtcgtgctggtaagtcaggtcgttctgta
accttcgtcagttacaatgaaatgggttatctccgtgccattgaaaaattgaccaagaaa
gaaatgaaaggcatgcgtccgccaacaaaagaagatgcttatcaagctagcctttctgtg
gccatggatgaaatcaaacgtgacctccaagacggtagtcttaaaggtaagttgacaaaa
tttgatgctgatgcagaacaactcttggcagaatatgatgtcaaagaattggtagccatg
cttatccaaagccgtgtgaaagaccctgacacaatgccagaagtccaaatcacagcagaa
cgcccactaccatttaatggtgaaggcaaaggcttcaagggcaaaggtggcggccgttat
gggcgtgaccgcaacaacaataatcgcggtggccgtgaaggcgatcgtgatggcaagggc
ggttaccgtggcaaaggcggcgaccgtgaccgcgacgacaagaaacgcaattggcgtgat
cgcgacgataaaaaacgtgactactacaagaaagaccgtaaaccaaaaacacaaggcagt
gaaaaacaagctggcttcgtaatgcgtaaccgcggtgacaaataa
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