Lysinibacillus varians: T479_10330
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Entry
T479_10330 CDS
T03062
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lgy
Lysinibacillus varians
Pathway
lgy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
T479_10330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_10330
Enzymes [BR:
lgy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
T479_10330
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
T479_10330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AHN21765
UniProt:
A0A806LJ61
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Position
2131232..2133049
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AA seq
605 aa
AA seq
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MLLVEANEPPKGDDWLYEGKYDGFRCLLQWTGEEPILKSRNGNVLNHLFPEIIDYCRSLY
NQIKEFLPLVFDGEIVYLINNYKSEFAIVQQRGRMQKKEVIAEHATSFPCHYIVFDLLSY
QGESQMNRYLKTRKQQLNTLFTSLKLPTAIKYEENHRLQAIDVFEDSQTLWHFIKIYNGE
GIIAKKKTSKWQEAVRSTHWLKIKNWKIVTVIVNKFDKGNGYFHGCVHRQGVLTEVVVFR
HGMKKDELNTLITFFQANGQQNNETWQLEPSICIDIACIDFDGSKLREPRFHAFRLEMEH
QYCNWQLMQRQLMPIPDSVPVTHPNKPVWPAIAITKEDYLYYLQLVSPFILPFLRNRPIT
LIRFPHGVPGESFYQKSSPEHLPAFVETERMSEHHSILCNNLETLLWLGNQLALEFHIPF
QTIDTEKPTEIVFDLDPPSVDAFSLAISGALHLKEIFDYFKLQSFVKTSGGKGLQVYIPL
PFNTFSYEQVRLFTEFVCRFLCEQKPELYTIERLKKNRKDRLYLDYVQHAEGKTIISPFS
TRGNEMGLVATPLHWNEVNDKLSPEQFTIPAVIERIKRVGNPLIHFQAIGEEQDFQAVLQ
HLNNQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgttattagtagaagcaaatgaaccgccaaaaggagatgattggctttacgaagggaaa
tatgacggattccgctgtctattacaatggactggtgaagagcctattttgaaaagtaga
aatggcaatgtgttaaatcatttgtttccggaaattattgattattgcagaagtctttat
aatcagatcaaagaatttttaccgttagtatttgacggagaaatagtgtatttaatcaac
aactataaaagtgaatttgcaatcgtgcaacaacggggaagaatgcaaaaaaaagaagtg
attgctgaacatgccacatcctttccttgtcattatattgtttttgatttactttcctat
caaggggaaagtcaaatgaatcgctatttaaaaacgcgaaaacagcaactaaacactctt
tttacatcgttaaagctaccgactgctattaaatatgaagaaaaccatcgtttacaagca
attgatgtttttgaagatagccaaactttgtggcatttcatcaaaatttataatggtgaa
ggtattattgccaagaaaaagacgagtaaatggcaggaggctgtacggtcaacacattgg
ctaaaaattaagaattggaaaattgtcacagtgattgtgaacaaatttgataaaggaaat
ggatattttcacggttgtgtgcatcgacagggtgtgctaacggaagtggttgtttttagg
catgggatgaaaaaggacgagttaaatacccttattacattttttcaagcaaacgggcaa
caaaacaacgaaacatggcaattagaaccatccatctgtattgatatcgcatgtatcgac
tttgatggtagtaagttaagagaacctcgttttcatgcctttcgattagaaatggaacac
cagtactgtaattggcaacttatgcaacgccagcttatgccaataccggatagtgtgcca
gtcacgcatcccaacaagccggtgtggcctgctatcgcgattacaaaagaggactatttg
tactatttacagcttgtatcaccctttatactgccatttttacgaaatcgacctattacg
ttaattcgttttcctcatggggtaccaggagagagtttctatcaaaaaagcagtccggaa
catctacctgcatttgtcgaaacagaaagaatgagcgaacatcatagtatcctatgcaat
aatcttgaaacactgttgtggttagggaaccaacttgcattagaatttcacatccctttt
caaacgattgacactgaaaagcctacagagattgtttttgacctagatcctccttcggtc
gacgcattttcacttgccataagcggtgcactacacttaaaagaaatatttgattatttt
aaactacagtcttttgttaaaacttctggtggcaaaggtttgcaagtttatattccatta
ccattcaatacattttcttatgaacaagttcgcctttttacagagtttgtctgtcgtttt
ttatgtgagcaaaaacccgaattatatacgattgaacgtttaaagaaaaatcgcaaagat
agattgtatttagattatgtgcaacatgcggaagggaaaaccattatatcgccgttttcc
accagaggtaacgaaatgggcttagttgcaacacctctacattggaatgaagtaaacgac
aaactatcaccggaacaatttacgatacctgctgttatagagcgaatcaaacgagtgggt
aatccattgatccattttcaagcgataggggaagaacaggactttcaggcagtgcttcag
catttaaataaccaataa
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