Leptotrichia hofstadii: JCM16775_0034
Help
Entry
JCM16775_0034 CDS
T06149
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lhf
Leptotrichia hofstadii
Pathway
lhf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCM16775_0034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhf03400
]
JCM16775_0034
Enzymes [BR:
lhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCM16775_0034
DNA repair and recombination proteins [BR:
lhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JCM16775_0034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBM37359
UniProt:
A0A510JDH5
LinkDB
All DBs
Position
complement(40230..43439)
Genome browser
AA seq
1069 aa
AA seq
DB search
MNFNLSFLNKIEKLKDKKIDILQSENNFYRGAIPWFLLCSEKKKIIYISTSNRNLENYHA
MLENYYETSEKQKNILTEKFKTDKKNIKESKNKLEDKKIIDIFENISQNKEDITGINIRL
LDILKNKEKFVLFVNLQITLDIFFEKVKFFSFEIGKEYSFTKIVEFLVENGYENSYLIEK
KGQYSRRGDILDIFPPDLENPVRMEFFGDELESIRIFDIDSQISVEKMEEIKVFGNLLSG
NNYELIELIDELRAEDVTIVVENEELLDYKMEEFILLDRSREEIYRKRYENLKKKSIFVQ
TKNFSQEQIETFRDKNRLEKLSKIEDIYIFTNNYEKKMAEFGQILTEKENNLEIEKYELF
EGFIFNDSSENLDTKNRKNNFIVLTDRELDGYIYERKKKTAKAIKYKKVNQIIEGDYVIH
VQYGVGIYKGIQTMEERDYLKIKYADEDILYIPVEKLDRLEKYVSNDTEPQLFRLGTRGF
KRKRKKLEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPFEETEDQRNAIN
DVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERFK
RRFENYPITIENLSRLTKSKSKDILKNLKSGIIDLVIGTHRLLSDDVQFKNLGLLIIDEE
QKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITEIL
DWDEETIKMAILRELSRDGQVFYIYNDVKNMKEKLKELKEMLPDFVKIEFINGQLPPKEI
KDKLLRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQLKGRVGRSNRQG
YCYLLKTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGEILGDKQHGTIETFG
YDLYIKMLNEEIRKQKGEFVKKIENVEIILDERGFIPETYIEKDERLNIYKRFAMLETDS
ELTDLLDEIRDRFGKIPEQMKKFILSIKLKLFAEKYKIQRIFEIKNHFELYFLENARAEQ
NELNERIEMKKVVKTIDAVSPKGKNKEEDTVDNLVVMKVKKTDLLTIVK
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaatttaagttttttaaataaaatagaaaaattaaaagataagaaaatagat
attttacaatctgaaaataatttttaccgcggtgcaattccgtggtttttattatgttcg
gaaaagaaaaagataatttatatttccacatccaacagaaatttggaaaattatcatgca
atgcttgaaaattattatgaaacatcagaaaaacaaaagaatattttaacggaaaaattt
aaaactgacaaaaaaaatattaaagaaagtaaaaataaactggaagataaaaaaataatt
gatatttttgaaaacatctcacaaaataaggaagatataacaggaataaatataagactg
ctagatattttaaaaaataaggaaaaatttgttttatttgtgaatttacagattactttg
gatattttttttgaaaaagttaagtttttttcctttgagattggaaaagaatatagtttt
acgaaaattgtggaatttcttgtggaaaatgggtatgaaaattcatatttgattgagaaa
aaggggcagtacagcagacgtggggatattcttgatatttttccgccagatttggaaaat
cctgttagaatggagttttttggagatgagctggaaagtataaggatttttgatattgat
agccagatttctgtggaaaagatggaagaaataaaagtttttggaaatttgctttctgga
aataattatgaattgatagagcttattgatgaattaagggcagaagacgtaacgattgtt
gttgaaaatgaggaattgctggactataaaatggaagagtttattttgcttgacagaagc
cgtgaggaaatttatcgaaaaagatatgaaaatctgaagaaaaaaagtatttttgtgcag
actaaaaatttctcgcaggaacagattgagactttcagggataaaaataggcttgaaaaa
ttgtcaaaaattgaagatatttatatttttacgaataactatgagaagaaaatggctgaa
tttggacaaattctgactgaaaaagaaaacaatctggaaattgaaaaatatgagctgttt
gaaggatttatctttaatgacagttcagaaaatctagatactaaaaatagaaaaaataat
tttattgtgcttacagacagggagcttgacggatatatttacgagcgaaagaaaaaaaca
gcaaaagctataaaatataaaaaagtcaatcagataatcgaaggtgactatgtaatccac
gttcaatatggtgttggaatttataaaggaattcagacaatggaagagcgggattatttg
aaaatcaaatatgctgatgaggatattttgtatattcctgtggaaaagctggacagactt
gaaaaatatgtgtcaaatgatacggaaccgcagttattcaggcttggaacacgtggattt
aagcgaaaaagaaaaaagctcgaagaagatattcagaaatttgcagcggaacttatcaaa
atacaggcacgacggcaaagccagaatggttttgtgtatcagaaggatactgtgtggcag
gaggaatttgaggcgaattttccatttgaagaaacggaagatcagagaaatgccataaat
gatgtgaaaaaggatatggaaagtccacaaataatggacagaattgtgtgtggagatgtt
ggatatgggaaaacggaagtcgcgatgagagcggcattcaaagcgattgacaacgggaag
caggttgttatggtagctccaactacggtacttgcagaacagcattttgagcgatttaaa
agaagatttgaaaattatccgattacaattgaaaatttatcacggcttacgaaaagtaaa
tcaaaggacattttaaaaaatctgaaaagtggaattattgacttagttattggaactcac
aggcttctaagtgatgacgtgcagtttaagaatttagggcttttaattattgatgaggag
caaaaatttggcgttaaggctaaggaaaagttaaaatctcaaagggaaaagctggatgtg
ctgacattaactgcgactccaattccacgtacattaaaccttgcgatgcttggaatccga
gagatttccataattgacacacctccaacaaacaggcttcctattataacagaaattctc
gattgggatgaggaaacaataaaaatggcaatactgcgtgaactgtcacgtgatgggcaa
gttttctatatttataatgatgtaaaaaatatgaaggaaaaattgaaggaactgaaggaa
atgcttccagattttgtaaaaatcgaatttataaatggacagcttccgccaaaggaaatt
aaggataagttattgcgttttgaaaatgggcagtttgacattctgattgcttcaacaatt
attgaaaatggaattgatgtgggaaatgccaataccattttgattgaaaactttactggt
ctaggattatcccaggtgtatcagctgaaaggccgtgtagggcgtagcaacaggcaaggt
tactgttatttattaaaaacgagaaatattacaaagcagggacgccaaaaggaagaaagc
atgctaaaagtggaagggataaaatcaggaggttttcaaatttcgatggaagacttgaaa
atacgtggtgctggggaaattttgggagataagcagcacggaacgatagaaacttttgga
tatgatttatacataaaaatgctaaatgaggaaattcgtaagcaaaagggtgagtttgtc
aaaaaaattgaaaatgtagaaattattctggatgaaagaggcttcattcctgaaacatat
attgaaaaagatgaaaggctaaatatctataaacgttttgcaatgctggaaacagatagt
gaattaactgatttgcttgatgaaattagagataggtttggaaaaattccagagcagatg
aaaaaatttattttaagcattaaattaaaattatttgctgaaaaatataaaattcagaga
atttttgaaataaaaaatcattttgaactgtactttttggaaaatgcacgagcagagcaa
aatgaattaaatgaaagaattgaaatgaagaaagttgtaaaaactattgatgcagtaagt
ccgaaagggaaaaataaagaggaggatacagttgataatcttgttgtaatgaaagttaaa
aaaacagatttgttgactattgtgaaataa
DBGET
integrated database retrieval system
