Leptotrichia hongkongensis: JMUB5056_0672
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Entry
JMUB5056_0672 CDS
T06709
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lhg
Leptotrichia hongkongensis
Pathway
lhg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMUB5056_0672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhg03019
]
JMUB5056_0672
Messenger RNA biogenesis [BR:
lhg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JMUB5056_0672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
TMP-TENI
YfbR-like
Motif
Other DBs
NCBI-ProteinID:
BBM59089
UniProt:
A0A510L6Q8
LinkDB
All DBs
Position
677456..678925
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AA seq
489 aa
AA seq
DB search
MNELELKIVDAKRRLETSKKEVEREIESFRKEETLKVKEELLNEKKIADDEIKKMKSELA
TKEERIAKKEETLETKMERLEERESKNEKYREKLFRREKELEEMIANEEKELERISELTQ
EDARKIILTKLENELDHDKAVLIRDYEHNLDREKDRISKRIISTAIGKAASDYVVDSTIS
VIQLPSEEMKGRIIGREGRNIRAIEAATGVDLIIDDTPEAVVLSSFDGVRREVAKIALEK
LISDGRIHPTKIEEVVAKAQHEVDESILDAAEQAILEVGIPTLPREVLKVFGRLKFRTSF
GQNILQHSIEVAHIASALAAEIGANVDIAKRAALLHDIGKAFSHEQEGSHAINGGEFLRK
FSKESEIVINAVESHHNEVEQLSIEAVLVQAADSISASRPGARRETLSNYLKRLEQLEEI
ANSHEGIESSYAIQAGRELRLIVHPDNIDDDKATILARDVAKEIEEKMQYPGQIKVTVIR
ETRAVEYAK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgaactggaattaaaaatcgttgatgctaaaagaagacttgaaacatcaaaaaaa
gaagttgaaagagaaattgaatcgtttagaaaagaagaaacactaaaagtaaaagaagaa
ttgttaaatgagaaaaaaatagcagatgacgaaataaagaaaatgaaatcagaacttgct
acaaaagaagaaagaattgccaaaaaagaagaaactttagaaacaaaaatggaacgttta
gaagaaagagaatctaaaaatgagaaatatcgtgaaaaattgttccgaagagaaaaagaa
ctagaagaaatgattgcaaatgaagaaaaagaattggaaagaatttctgaactgacacag
gaagatgcaagaaaaattattttaactaagctggaaaacgaactagatcacgataaagct
gtattaataagagattatgaacacaatttagacagagaaaaagatagaatttcaaaaaga
attatttcaacagcaattggaaaagctgcttcagattatgttgttgattctacaatttca
gttattcagttaccaagtgaagaaatgaaaggtagaattattggacgtgaaggaagaaat
ataagagccattgaagctgcaacaggagttgatttaataatagacgatacgcctgaagca
gttgtactgtcttcttttgatggtgtaagaagagaagtagctaaaattgcacttgaaaaa
ttgatttcagatggacgtattcatccaacaaaaatagaggaagttgtagcaaaagcacag
catgaagtagatgaaagcatattagatgctgcagaacaggctattttagaagtaggaatt
ccaacattgccacgtgaagtattaaaagtgtttggacgtttgaaattcagaacatctttc
ggacaaaatattttacagcactcaatagaagttgcacatatagcttcagctttagcagca
gaaattggtgcaaatgttgacattgctaaaagagcggcattattgcatgatataggaaaa
gcattttcacatgagcaagaaggatcacatgctataaatggtggagaatttttaagaaaa
ttctcaaaagaaagtgaaattgtaataaatgctgtagaatcacatcataatgaagtagag
caattaagcatagaagctgtattggtacaagcagcagattcaatttcagcctcaagacca
ggagcaagacgtgagacattatcaaattacttgaaacgtctagagcagttagaagaaatt
gctaatagtcatgaaggaattgaaagctcgtatgcaattcaagctggaagggaattaagg
ttaattgttcatcctgataatattgatgatgataaagctacaatactagctagagatgta
gcaaaagaaatagaagagaaaatgcaatatccaggacagataaaagttactgttataaga
gaaactagagctgtggaatatgcaaaataa
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