Linepithema humile (Argentine ant): 105670279
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Entry
105670279 CDS
T04898
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105670279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lhu03041
]
105670279
Enzymes [BR:
lhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105670279
Spliceosome [BR:
lhu03041
]
Complex C
Other components
Step II factors
105670279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Snu56_snRNP
AAA_30
FMP27-BLTP2_C
Motif
Other DBs
NCBI-GeneID:
105670279
NCBI-ProteinID:
XP_012219120
LinkDB
All DBs
Position
Unknown
AA seq
1204 aa
AA seq
DB search
MDEVNKLEHLSLVSKICTELENHLGLNDKDLAEFIIHLAEKNDTFPAFKKVLIENGAEFS
DSFMANLLRIIQHMKPTKTSSEKLSKLMNKQDELAIKFPALALPNEDLQRPVANDAKDED
IVNDVMASLESFAPSNRKQSADIEKNNSATDSSTEKKHKRGKKSRSRSRDRRRHRSRSPN
RKERRHRSRSRSKSRNRHRSRDRTRRRRSGSRERRRSPSRDRRDARHRKRDADRSRSRSV
EESLAMEPEVSKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVS
RGQKVLVKVLSVGGQKVSLSMKDVDQETGRDLNPVMAVVKAEEDEKRLRNPDRPTSLLEL
QGNYDEDETYSRKRVQRLSSPEKWEIKQMMAASCIDRSELPEFDTETGILPREDDEEEDV
EIELVEEEPPFLQGHGRALGDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMLQREQE
MDSVPTGLNKNWIDPLPEAESRTLAANMRGIGLQTQDLPEWKKHVIGGKKSSFGKKTNLT
LLEQRQSLPIYKLRDDLVKAVTDNQILIVIGETGSGKTTQITQYLAESGFTARGKIGCTQ
PRRVAAMSVAKRVAEEFGCCLGQEVGYTIRFEDCTGPETSIKYMTDGMLLRECLMDLDLK
AYSVIMLDEAHERTIHTDVLFGLLKQAVGRRPDLKLIVTSATLDAVKFSQYFFEAPIFTI
PGRTFDVEVMYTKEPETDYLDAALITVMQIHLREPPGDILLFLTGQEEIDTACEILYERM
KSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDP
GFVKQKVYNSKTGMDSLIVTPISQAAAKQRSGRAGRTGPGKCYRLYTERAYRDEMLPTPV
PEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALESLHSLSALDNEGLLTRLG
RRMAEFPLEPNLSKMLIMSVHLQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQ
PEGDHLTLLAVYNSWKNNKLSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAG
KNTVRIQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQT
TKEYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVR
RRRN
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagtgaataaactggaacacctctctttggtgtcaaaaatctgcacggagttg
gaaaatcatttgggattgaacgacaaggacttggctgaatttattatacatctggccgag
aagaacgacacattcccagcgttcaagaaggtattgatcgagaatggagcagaattctcg
gattcttttatggccaatctgctcagaataatacaacatatgaaacctaccaaaacatct
tctgagaagctatccaagcttatgaataagcaggatgaactggcgattaagtttcctgcg
ctggcgttaccgaatgaggatctgcagcgtcccgttgcaaacgatgcgaaagatgaagat
attgttaacgatgttatggcctccctggaatcatttgcaccgtccaatagaaagcaatct
gcagacatcgaaaaaaataacagtgcgactgatagcagcactgagaagaagcataaacgc
ggaaaaaaaagcagaagcagatcgagagatagaagaagacatagatcgagatcgccgaat
cgaaaagagaggcggcatcgatctagatcgcgctccaaatcccggaatcgtcacagatcg
cgcgatagaacgcgtaggaggcgttccggatcccgggagcgcagaagatcgccgtcccgc
gatcgtagagatgcgagacacaggaaacgcgacgccgacagatcgcgatcgagatccgtc
gaggaatcgctcgcaatggaaccggaagttagtaaaatttatgctggcaaggtcgcgaac
atcgtgccatttggctgtttcgttcaacttgaaggcctgaggcgcagatgggaaggtttg
gttcatatctcccaattgaggcgcgaaggtagagtggcaaacgcgagcgacgtggtctcg
agaggtcaaaaagtcctggtgaaggttctcagcgtcggtggacagaaggtatccctgagc
atgaaggacgtcgatcaagaaaccggcagggatctgaatcccgtgatggcagtcgtgaaa
gcggaagaagacgagaagcgactgcgcaatccggacagacctacgtctttgttggaactt
cagggcaactacgacgaagacgagacgtactcgaggaagcgcgtgcagcgcttgtcgtcg
ccagagaagtgggagatcaaacagatgatggctgcgtcgtgcatcgacaggagcgagtta
ccggagttcgatacggaaacggggatcctgccgcgggaagacgacgaggaggaggacgta
gagatcgaactcgtcgaagaggagccgccgttcctgcaaggtcacggtagagcgctgggc
gatctcagtcctgtccggatagtgaagaatccggacggctcgttagcgcaagcggcgatg
atgcagagcgctctggcgaaggagcgaagggagcagaagatgctgcaacgcgagcaggag
atggattcggtgcctaccggcttaaacaagaactggatcgacccgctaccggaagcagag
agtcgcacgctggcggcgaatatgcgcggaatcggattgcagacgcaggatcttcccgaa
tggaaaaaacacgtgataggcggcaaaaaatcatcgttcggcaagaaaacaaatcttacg
ttactggagcaacgtcaaagtctgccgatctacaagctgcgcgacgatttggtgaaagcg
gtgacggataatcagattctgatcgtaatcggggagactggctcgggcaaaacaacgcaa
attacgcagtatcttgcggaatccggttttacagcacgcggcaagatcggctgcacgcag
ccgcgacgagtcgcagccatgagcgtggccaagcgcgtggccgaagaattcggctgctgt
ctcggtcaagaggtaggctatacgatccgttttgaggattgcaccgggccggagaccagc
atcaagtacatgacggacggtatgctgctgcgcgagtgcctgatggacctggatctgaag
gcatactcggtgattatgctggacgaggcgcacgagcgcacgattcacacggacgtgctg
ttcggtctgctgaagcaagcggtcggccgcaggcccgatctcaagctgatcgtcaccagc
gccaccctggacgcggtcaagttttcgcagtacttcttcgaggcgccgattttcaccatt
cccggacgcacgttcgatgttgaagttatgtacacgaaagaaccggagacggattatttg
gacgctgcgctgatcaccgtcatgcagattcatctgcgtgaaccgccgggcgatattctg
ctcttcctcaccggtcaggaagaaatcgacacggcctgcgagattctctacgagcgcatg
aagtcgctcggtccggacgtgccggagctgattattttgccggtttattcggctctgccc
tcggaaatgcagaccagaatattcgagccggcgccgcccggctcgcgcaaagtcgtcatc
gccacgaacatcgccgaaaccagcctgacgatcgacggtatttattacgttgtcgatccg
ggcttcgtcaagcagaaggtgtacaactccaagactggaatggacagtcttatagtgacg
ccgatcagtcaggcagcggcgaagcagaggagcgggagagccggcagaaccggacctgga
aaatgttacagattgtacaccgaacgggcttacagagacgagatgctgcctacaccggtc
ccggagattcaacggacaaatctggccaccaccgtgctgcagctcaaaactatgggcatc
aacgatctattgcatttcgatttcatggacgcaccgcccgtggagtcgctgattatggcg
ctggagtcattgcacagtctgagcgccctcgacaacgaaggtctgctgacccgactcggt
cggcgaatggccgagttcccgctggagccgaacctatccaagatgctgatcatgagcgtg
catttacaatgttccgatgagatcttgaccatcgtcagcatgctgtccgtgcagaacgtc
ttctatcggccgaaggacaagcaagccttggccgatcaaaagaaagcgaaattcaatcaa
cctgagggcgatcacttgactttgctggcagtctataattcctggaaaaataataagcta
agtaatgcctggtgctacgagaatttcgtgcagatcaggacgctgaagcgcgctcaggac
gtacgtaagcaactgctgggcataatggataggcataagctggacgtggtgtcagccggc
aagaacactgtgcgcatacagaaggcagtgtgctcaggattcttcaggaacgccgcgaag
aaggatccgcaggaaggatacaggacattggtcgacagccaagtcgtgtacattcatccg
agtagcgcgttattcaatcgccaaccggagtgggtcatctatcacgaactcgtacagacc
acgaaggaatatatgagagaagtgacgactatcgatcccaaatggcttgtggaattcgca
cccgcgttcttcaagttcagcgatccgaccaagcttagcaaattcaaaaagaatcaaaga
ctggagccgctctacaacaagtatgaggagccgaatgcgtggagaatatctcgggttcgc
aggcgacgtaattaa
DBGET
integrated database retrieval system
