Linepithema humile (Argentine ant): 105675252
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Entry
105675252 CDS
T04898
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105675252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhu03400
]
105675252
Enzymes [BR:
lhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105675252
DNA repair and recombination proteins [BR:
lhu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105675252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
BRCT_2
RNA_ligase
LIG3_BRCT
DivIVA
Lipoprotein_9
Peptidase_C14
Motif
Other DBs
NCBI-GeneID:
105675252
NCBI-ProteinID:
XP_012227672
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MATSLEAKIEFKQLCDIFENITKAHKADKKTQILQTFIDKCRNISNKLKKECPESDASLY
PILRLILPNLERERGPHNLKQASLTNVYADVFGFAKTSDTYKKLANYREPTPGKFTGNDF
ADRAYQILDKRFPRTSTGFTIERVNRFLDDISEKNATKQRKVETFRVLFRRITSFEMKWL
TRVILKDLRLGVGKERILQIYHEDANEKFLVTNDLREISDQLHDPRTKVQSGIQIFSHFK
PMLLEKCSIENIDKLFRGNDLYYAQTKYDGERSQLHMKDGKFKYFTRKGHDITANPGYGE
TGSSGFLTSVFTRCLNPNCYSFILDGELMGWHKEKRMFGTKGMNFDVKKLSKNAHHQPCF
VAFDVILHNDILLVDKPYKDRLKLLNDIFTEEEGSLIICPHTSISNKEELIKAFNDCVRN
KEEGLVVKKYNVKYKPNVRNGSNCYKIKAEYSENLVQDLDLIILGGYYGEGKYTGMIKSF
LMGVADPSCNEGENPSRFLSVVSVSTGIDDQTLHDLQKKFWIKECPNGVKGPKKSLPDVW
IHPEHSMILTIRATEMIRSSEYPTGYSLRFPRVTCIRTDKPWYSPDTTSELLSLVKDKGM
IQKLNKREATLDDINEAPVPKVRRTATRSEPVGYVYNTYNVYSKRIKALTRLLDGKEICV
VNGTDELEKEQIEEILQQHSARVVQNPRNTTFCVIVGNDKTMRGKEMVNSKKYDVVTVDW
FKRITNQSDLSSLGDFLPWELLSSQDTTKQRLADNFDEYYDSFMIDADEESLKRSFDKIA
KSLADNQLTVEQGKEMDEELFDGNASPYSLFRDVIGFFENPSCCAKFKFRFMSGTIKDNI
DNSVTHVFVDDSEANTTVRNLEASLKIVKCKWIEDCFRNRQVCEIADYLIDR
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggctactagtttagaagctaaaattgaatttaaacaattgtgcgatattttcgaaaat
attaccaaggcacataaggctgacaaaaaaacgcaaatcttgcaaacatttattgacaaa
tgtcgaaatattagcaacaagctgaaaaaggaatgtcctgaatcagatgcatcgctgtat
ccgatattgagattaatattacctaatcttgaacgagagcgtggaccacataatttgaaa
caagcctcgctgacaaatgtttacgccgacgtgtttggttttgcaaaaacgagtgacact
tataaaaaattggcaaattatcgagaacctacgccaggcaaattcacaggaaatgatttt
gctgatcgagcttatcaaatattagacaaaagattccctcgaacaagcaccggattcacg
attgagcgggtgaatagattcctcgatgacatctccgagaaaaatgcgacgaagcagcga
aaggttgaaacatttagagtactttttcggcgaatcacgagtttcgaaatgaaatggtta
acacgagttattcttaaggatttacggctcggtgtaggaaaagagaggatactgcaaatt
tatcatgaagacgcgaatgagaagtttctcgtaacgaacgatttacgcgagatttctgac
cagctgcatgatccgaggacgaaagtacaaagtggcatacagatattttcgcactttaaa
ccgatgctcttggagaaatgcagcattgagaatatcgacaagttatttcggggcaacgac
ttgtactatgcacaaaccaaatacgatggcgagagatcgcaacttcatatgaaggatggc
aaattcaaatatttcacgcgtaaaggacacgacattacagcgaatcctggatacggggag
actggatcttcaggtttcttgaccagtgtatttacacggtgtttgaatccgaattgttat
tcctttatattggacggcgaattgatgggttggcataaagagaaacgaatgtttggcaca
aaaggtatgaatttcgacgtcaagaagctatcgaagaacgcacatcatcaaccgtgtttc
gtcgcattcgatgttattctgcataatgacatcttgcttgttgacaagccttacaaagat
aggctgaaactgctcaatgatatatttaccgaagaagaaggttctttaattatatgtcca
catacctcaatttcgaataaggaggaattgataaaggcattcaacgactgcgttcgtaat
aaagaagaaggacttgtcgtaaaaaagtataatgtaaaatataaaccaaatgtccgaaac
ggcagtaattgttataaaattaaagcagagtattccgagaatttagtacaagatttagac
ttgattatacttggcggttattatggagaggggaagtacacaggaatgattaaaagcttc
ttgatgggcgttgccgatccatcgtgcaatgaaggagaaaatccgtcgcgatttctctct
gtcgtatccgtaagcactggaatagacgatcaaacgttgcacgatctccagaaaaagttt
tggattaaggaatgtcctaacggtgtcaaaggtcccaaaaagagtctgccggacgtatgg
attcatccagaacattctatgatcttaacgatacgggcgacggaaatgatacgcagcagt
gaatatccgactggatacagtttgcgatttcccagagtcacgtgtatcagaacggataaa
ccgtggtacagtcccgatactacttccgagctcctgtctttagtcaaagacaaaggaatg
atccagaagttgaacaagcgagaggccactctggacgacatcaacgaagcgccagtgcct
aaagtacgaaggacagcgacgcgaagcgagccggttgggtatgtatacaacacgtacaat
gtgtacagtaagcgaataaaagcactcacgcgattattggacggaaaagaaatttgcgtg
gtgaacggcaccgacgaattagagaaagagcaaattgaagaaatactgcagcagcacagc
gcgcgcgtcgtacagaatccgaggaatacaactttctgcgtgatagtcggcaatgataaa
acgatgcgagggaaggaaatggtgaatagtaaaaaatacgacgttgtaactgtggattgg
tttaaacgcatcaccaatcagtctgatttatcttcactgggtgatttcttaccgtgggag
ttattaagcagtcaagatactactaagcagcgacttgcggataactttgatgaatattat
gatagctttatgattgacgcggatgaggagagtctgaagcgctcgttcgacaagattgca
aaatcgcttgcagacaatcagcttactgttgagcagggaaaagaaatggacgaggaattg
ttcgatggaaatgcgtcgccgtactcgctgtttagggatgtaattggattctttgaaaat
ccatcgtgctgtgccaaattcaaattccgcttcatgtcggggacgatcaaagataatatc
gacaattctgttacacatgttttcgtggatgacagcgaagcaaatactactgtgaggaac
ttggaagcgtctttaaaaattgttaaatgtaaatggatcgaggattgtttccgaaatcgc
caagtgtgtgaaatcgcggactacctgatcgatcgttag
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