Lysobacter helvus: LYSHEL_25690
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Entry
LYSHEL_25690 CDS
T07483
Symbol
lig3
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lhx
Lysobacter helvus
Pathway
lhx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lhx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LYSHEL_25690 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhx03400
]
LYSHEL_25690 (lig3)
Enzymes [BR:
lhx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LYSHEL_25690 (lig3)
DNA repair and recombination proteins [BR:
lhx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LYSHEL_25690 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BCT96698
LinkDB
All DBs
Position
complement(2698457..2700991)
Genome browser
AA seq
844 aa
AA seq
DB search
MSLTEYRRKRQFDKTREPAPGKPLPKGERPIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVSYASFEGDIPHGEYGGGHVALFDHGVWSTPYDPEAQLAK
GHLRFELFGEKLKGEWHLVRSGKAARQPTWLLFKEKDAYAGPVEADELLDDVTPPPGAPK
KAAKKTAKKIAKVAPKRRRKVDWAAKASKLPGAKKATLRNEAFEPQLAKLGDTAPSGAQW
IHEVKWDGYRLVATMVGGKVRIWSRNAIEWTAKVPELRAALEALGVQSAAFDGELIAGRG
TQADFNLLQATLSGEQQGALSYVLFDLLHLEGVDLRKAPLVERKALLEDLLSTPTPHLAY
SSHVPGDEGDAAFALASEQQFEGIISKRAQGAYHAGRGDDWRKTKRLDSDEFAVVGTTPG
QGARTGFGALLLARPDPEHGWSYAGRVGTGFTGELIREIVEHIGKRKTSTTPTVYVPPNA
ITPADGKRATWFKPAFVVEVFIRGIGNSGVLRQPSLKTLRLDKDVDDLLDSDRAPAKKAA
KKTATKRAGATARERAPAPETRLSSPTKIIFPDRGITKLQVAEYYRAVAPHLLAGIAGRP
LSIIRCPSGAGKPCFFQKHHTAGLDVVRFVRLKEEAGINANYLVVDDLAGLMELVQFNAL
EFHPWGSHADTPDIADRIVFDLDPGPNVPFAEVKRSAQQVHDLLQQLGLQSFLRTTGGKG
LHVVVPLNPGNRWPLVKQFAKGFAEALAGSEPDRYLATATLKLRPGKIFVDYLRNGRGAT
AVASYSLRARDGAPVAVPLAWRELAALKRGDAFDLDATVARLKKQRKDPWAGIDTIRQDL
ASLG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccgagtaccgccgcaagcgacagttcgacaagacgcgcgagcccgccccg
ggcaagccgttgccgaagggcgagcgccccattttcgtggtgcagctgcatcacgcgtcg
cgccggcattacgacttccggctgcaggtcggcgatgcgctcaagagctgggcggtgccg
aaggggccgagctacgaccccaaggtgaagcgcatggccgtggaagtcgaagaccacccg
gtgtcctacgcatcgttcgaaggcgacatcccgcacggcgaatacggcggcgggcacgtg
gccttgttcgaccacggcgtgtggtccacgccctacgacccggaagcgcaactcgcgaag
ggacatctgcgtttcgagttgttcggcgagaagttgaagggcgagtggcatctcgtgcgc
tcgggcaaggccgcgcgacagccgacgtggctgttgttcaaggagaaggacgcgtatgcc
ggccccgtggaagccgacgaactgctggacgatgtgacgcccccgcccggtgctccgaaa
aaagcggcaaaaaagaccgcgaagaaaatcgcaaaagttgcccccaagcgacgccgcaaa
gtcgactgggccgcgaaggcttcgaagctccccggcgcgaagaaggccacgctccgcaac
gaagccttcgaaccccaactcgcgaaactcggcgacaccgcgcccagcggcgcgcaatgg
atccacgaagtgaagtgggacggttaccgcctcgtggcgacgatggtcggcggcaaggtg
cgcatctggtcgcgcaacgccatcgaatggacggcgaaggtgccggagttgcgcgcggcg
ctcgaagccctgggcgtgcaaagtgcggccttcgacggcgaactcatcgcgggccgcggc
acgcaggcggatttcaacctgctgcaggccacgctgtcgggcgaacaacaaggcgcgttg
tcgtacgtgctgttcgacctgctgcacctggaaggcgtggatctgcgaaaggcaccgctg
gtcgaacgcaaggcgttgctcgaagacctgctgtccacgccgaccccccacctcgcctac
agctcgcacgtccccggcgacgaaggcgacgccgcattcgcgctcgcgtcggagcagcaa
ttcgaagggatcatctccaagcgcgcgcaaggcgcgtaccacgcggggcgcggcgacgac
tggcgcaagacgaagcgcctggactccgacgagtttgccgtcgtcggcaccacgccgggg
caaggcgcgcgcacgggcttcggtgcgttgctgctcgcgcggcccgatccggagcacggc
tggtcgtacgccggccgcgtcggcacgggcttcaccggcgaattgatccgcgagatcgtc
gaacacatcggcaagcgcaagacctccaccacgcccacggtgtacgtgccgccgaatgcg
atcacgccggcggacggcaagcgcgcgacctggttcaagcctgcgttcgtcgtcgaggtg
ttcatccgcggcatcggcaactcgggcgtgttgcggcagccgtcgttgaaaacgctgcgg
ctggacaaggacgtggacgacctgctggattccgatcgcgcgcccgcgaaaaaggcggcg
aagaagacagccacgaaacgcgccggcgccaccgcgcgcgaacgcgcccccgcccccgaa
acccgcctcagcagcccgacgaaaatcatcttccccgaccgcggcatcaccaagctgcag
gtcgccgagtactaccgcgccgtcgcaccgcacttgctcgccggcatcgcaggccgcccg
ctttcgatcatccgctgcccgagcggtgcggggaaaccgtgcttcttccagaaacaccac
accgcaggcctcgacgtcgtgcgcttcgtgcgcctgaaggaagaagccggcatcaatgcg
aactacctcgtcgtcgacgatctcgccggcctgatggaactcgtgcagttcaacgcgctc
gagttccacccgtggggctcgcacgccgacacgcccgacatcgccgaccgcatcgtgttc
gacctggaccccggccccaacgtgccgttcgcggaagtgaaacgatccgcgcagcaagtc
catgacctgttgcaacaactcggcctgcaatccttcctccgcacgaccggcggcaagggc
ctgcacgtcgtcgtgccgttgaaccccggcaatcgctggccgttggtgaagcaattcgcg
aaagggttcgccgaagcgctcgcgggctcggagcccgatcgctacctcgccaccgccacg
ctgaaactgcgcccggggaaaatcttcgtcgactacctgcgcaacgggcgcggcgcgacc
gcggtggcgtcgtattcgctgcgcgcacgcgacggcgcaccggtggcggtgccgctggcg
tggcgcgaactggccgcattgaagcgcggcgacgccttcgacctcgatgccaccgtcgcg
cggctgaagaagcaacgcaaggatccgtgggcaggcatcgacacgatccggcaagacctg
gcgtccctgggctga
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