Legionella israelensis: E4T55_09585
Help
Entry
E4T55_09585 CDS
T05938
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lib
Legionella israelensis
Pathway
lib03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E4T55_09585 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lib03400
]
E4T55_09585 (ligD)
Enzymes [BR:
lib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E4T55_09585 (ligD)
DNA repair and recombination proteins [BR:
lib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E4T55_09585 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QBS10080
LinkDB
All DBs
Position
complement(2105129..2107576)
Genome browser
AA seq
815 aa
AA seq
DB search
MSLRKYREKRDFSKTDEPYGKSHSGHPHLFIIQKHAATKLHYDFRMELEGVLKSWVIPKG
PCLDPDTKRLAIQVEDHPIEYGSFEGIIPKNEYGGGTVMLWDKGRWESLDEDALSAFEKG
HMRFVLDAIKLKGRWDLVRFQSEEDNSWFLIKYDDKYARSLKDYDITQELPNSAVSQQSM
DEITEHYQNIWSGQNLKKRSVTLVADFIKANNLPSSPFPSFLDPQLATPVDTPPEADNWL
HEVKWDGYRILAFKHHQDVQLLSRNHKSWTHVFQNITDEIKKLPVDHIVFDGEVVVLDKK
NHSNFQLLQNAIHDKKHTVFIYYVFDLLYYHQWNLQSLPLIKRKNLLAEYLRGHECLRYS
EHILGQGKEVFQKACQMGVEGILSKRVNSRYLSQRTKAWLKIKCIKRQEFVITGFSPPKG
QRDFFSALYLGLYNEQNQLEFCGKVGTGFTRNSLKNIHEKLKKLIIPHPPFDVVPAGTKN
AIWVKPELIAEIKFTNWTQHGKLRHPSFQGLRMDKKAKDVHREQPLKNCLHEHDAVLSNP
QKMLYPKDKISKADVYQYYEEIADYILPFLQKRPLSLLRCPDSYDDCFYQKQFSQYNVKH
IQTFPSKNKKMIYLTNKEGLLELIQMASLEIHPWGSTVDHIERPDIITIDLDPGPDVAWS
NIVRAAVEIKDYLIELQLTSFVKTTGGKGLHVVIPILPEHSWDTIKRFTKLFVQFVARQH
PERYTSHMAKAKRKGKIFLDYLRNQRGATAISPYSTRAKLHAPVAVPIHWDELTSNIEDT
LFTLQTLPKRLRALKVDPWKNFWQIGQRLKINTHE
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgagaaagtaccgtgaaaaaagggatttcagtaagacagacgagccttatggc
aagtctcattcaggccatcctcatttgtttattatccaaaaacatgcagccactaagtta
cattatgattttagaatggaactggaaggagttcttaaaagctgggtaatacctaagggt
ccttgccttgatcctgacactaaacgattagccatacaggtagaagatcatcccattgaa
tatggcagctttgaaggcattattcccaaaaatgaatatggtggcggtacggttatgctt
tgggataaaggaagatgggaatctctggatgaggatgctctatctgcctttgaaaaaggt
catatgcggtttgtactggacgccatcaaacttaaaggaagatgggatttggtccgtttt
caatctgaggaggataattcctggtttcttatcaaatacgatgataaatacgcccgatca
cttaaggattatgatattacccaggaattacccaacagcgcagtcagccaacaatccatg
gatgaaattactgagcattatcaaaacatctggtctggtcaaaacttaaaaaagcgatct
gtaacattagtggcggattttataaaagcgaataacctgccttcctcccctttcccctca
tttcttgacccccagttggcaacaccagtggacacaccccccgaagcagataattggctt
catgaagtcaaatgggatggttatcgaattttagcctttaaacatcatcaagatgttcag
ttgctctcccgaaatcataaaagttggacacatgtctttcagaacatcacggatgaaatt
aaaaaattaccggttgatcatatcgttttcgacggtgaggtggttgttttggataaaaaa
aatcattccaattttcagcttttacaaaatgccattcatgataaaaaacacactgttttt
atatattatgtattcgatcttttatactaccatcaatggaatttacaatccttaccctta
ataaagcgcaaaaatctattggctgaatacttgcgaggtcatgagtgtttaagatatagc
gaacacatcttaggacaaggaaaggaggtgtttcaaaaagcctgtcaaatgggagtggag
ggcatcttatccaaacgagtaaacagccgttatttaagtcagcgcacgaaggcctggtta
aagattaagtgtataaaaaggcaggaatttgttattaccggcttttctcccccaaaaggt
cagagagattttttcagtgcactctatttaggcctatataatgaacagaatcagctggaa
ttctgcggcaaggtaggcacagggtttactcggaattcattaaaaaacatccacgaaaaa
ttgaaaaaattaatcattccgcatcctcctttcgacgtcgtacctgcgggtacgaaaaac
gcgatttgggtaaaacccgagcttattgcagaaattaaattcacaaattggacccaacat
gggaaattaagacatcccagttttcaaggtttacgcatggataaaaaagctaaagatgtt
cacagggagcaaccgctgaaaaattgtctgcatgagcatgatgctgttctttccaatcca
caaaaaatgttgtacccaaaagataaaatcagtaaggcagatgtctatcaatattacgaa
gaaatagcagattatattcttccttttctgcaaaaacgaccgctcagtctattacgttgt
cctgactcttatgatgattgtttttatcaaaagcaattttctcaatataacgtcaaacat
atacagacattcccaagtaaaaacaaaaaaatgatttacctgacaaataaagagggttta
ttggagttgattcaaatggccagcttggaaattcatccttggggaagcacagtcgatcat
attgaacggccagacatcatcaccatcgatctggatccaggccctgatgtggcctggtca
aatattgtcagggcagctgtcgagataaaagattaccttattgagcttcaattaacttct
tttgtgaaaaccactggaggaaaagggcttcatgtcgttattcctatcttacctgagcat
tcatgggatactattaaacgatttacaaaactttttgttcaattcgtggcaagacaacat
cctgagcgttatacaagtcatatggcaaaagcaaaaagaaaagggaaaatttttcttgat
tatctgagaaatcaacgtggtgctacggccattagtccttattcaactcgcgcaaaattg
catgctccagtggcggtccctatccactgggatgaattaacttctaacatagaagatacg
ctgttcacactgcaaacgcttcccaaacgattgagggcgttaaaagtggacccatggaaa
aacttctggcaaattggacaaagattaaaaataaatactcatgaataa
DBGET
integrated database retrieval system
