Lawsonia intracellularis N343: LAW_00315
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Entry
LAW_00315 CDS
T02437
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lir
Lawsonia intracellularis N343
Pathway
lir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAW_00315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lir03400
]
LAW_00315
Enzymes [BR:
lir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAW_00315
DNA repair and recombination proteins [BR:
lir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAW_00315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Antiterm
AAA_16
AAA_30
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGC49716
LinkDB
All DBs
Position
complement(382099..385566)
Genome browser
AA seq
1155 aa
AA seq
DB search
MEYKECLKQLLRCQNKRIALQKAGLATQVKLSVDLIAHGAKVLLIARNRDELGTLHSLIS
VFTSEGGHNVLKSNNIFNNTWVTLSPFTSRSLSKEGWAERLAALYALRYGKVQGLILTID
NLLPKEVPLDFFDNQVIQLSVGEELSPDIILEQAITWGYDRVSMVSNPGEVSRRGDIFDI
MSPGYHYPLRLDFFGETLEEIRFFDPLTQRSKGYIDNAIILPVYPVRSGTEYIATIESYW
NKLLKENVITENEHYSLFRLLEQKDFSLLPGCCYENATTIEQWVNKDKVWILPSLHEAED
ILTSMENSWNDRLKRESGFIQPLDLAIRNTLQVKELWCQSTIVHTESLDIDIDDQEEVVE
LPEKAISSFQMLFPTVAEQDRPWQHLIQAIKKWKQDKYQLILSFSSERSRNKFLNLAEQD
GVTPFLEYHPTQQGCFAIISPFRVGVDLSWFNILILGEDVLQPHTGKSRQAPAESFKGLS
RYDDLNPGDLLVHKNYGVARFGGLIRMDIGKISNDFLLLEYAGNDKLYLPVDRLSLTQRF
KSVNESFPQLDRLGSTSWQASKDKAKKSIEKVAEDIIEMYAWRKVAKGFTYPPVGDLYRE
FEASFGFEETPDQARAIQDVLADMEKSEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQV
ALLCPTTVLAEQHYYTFRSRLSGFGINVGLLSRFVPLQKQKEIFKAASSGQIDVLVGTHK
LLSDSVSLPNLGLLILDEEQRFGVKHKEKLKKMKKNVDVLTLTATPIPRTLQLSMSGICE
LSVIETAPPERKPVATAIIKKNKEKLKEILERELAREGQVFWVYNRVQGLEQIVNFVKEL
VPEARVGVAHGQMPEKQLEENIHAFWHAELDILVCTAIIESGLDFPRANTLIVDQAHMFG
LGQLYQLRGRVGRSDRQAYAVFVISDLESLSEQARERLRIILELDYLGAGFQVAMEDLRI
RGAGNILGEAQSGHISRVGIELYLEMLEEAVTKLKGEGVTSYPETELTLGLTAHIPQNYI
SDSHERLRWYKALSSAQSVMARNEIELELRDRFGVLPNELKAFIAVLNFKQFLTESQVIK
AEIYEDKIKLVWPEKQTVVSFDKLMLFISAQPDKVKLSPPATLEIKLNTTLPIEDRLISL
QEELSVVFSYDSIKQ
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
gtggagtataaagaatgcctaaaacaactccttcgttgtcaaaataaacgtattgcatta
caaaaagcaggacttgctactcaagtaaaacttagtgttgatctcattgcacatggtgca
aaagtattacttatagcacgtaatagagatgagttaggaactttacattcccttatatct
gtttttacatcagaagggggacataatgtattaaaatctaataatatatttaacaacaca
tgggtaacactttctccttttacatcacgctctttaagtaaagaaggttgggctgagcgt
cttgctgctctctatgcacttagatatggtaaggtacaaggccttattcttactatagac
aatttgcttcctaaagaagttcctctagatttttttgataaccaagttattcaactatca
gttggagaagagctttctccagatatcattcttgaacaagctattacttggggatacgat
cgagtgtctatggtatcaaatccaggagaagtatcacgacgtggtgatatttttgatatt
atgtctccaggatatcactatcctctccgcttagacttttttggtgaaacattagaagaa
atccgcttttttgatccattaactcaacgatctaaaggatacatcgataatgctattatt
cttccagtctaccctgtccgttcaggtactgagtatatagccactatagaaagctattgg
aacaagttgcttaaagagaatgtaattactgagaatgaacattacagtctttttcgtttg
cttgaacaaaaagatttttctttattaccaggttgttgttatgaaaatgctactacaata
gagcagtgggttaataaagataaggtttggatattaccaagccttcatgaagcagaagat
attcttacttccatggagaatagttggaatgatcgtttaaaaagagaaagtggatttata
caacctttagatttagctatacgtaatactcttcaagtaaaggagttatggtgtcaatct
actatagttcatactgagtcactagatattgatattgatgatcaggaagaagtagtagag
ttaccagaaaaggctatttctagtttccaaatgttatttcctacagttgctgaacaggat
agaccctggcaacatcttatacaggcaataaaaaagtggaagcaagataagtatcaacta
atcctgtctttttcttctgagcgaagtagaaataagttccttaaccttgcagagcaagat
ggtgttacaccattcctagagtaccatccaacacagcagggttgttttgctattattagt
ccattccgtgtaggagttgatctttcttggtttaatatccttattttaggagaagatgtt
ctccaaccacacactgggaaaagcagacaggctccagctgaatcttttaaaggacttagt
cgatatgatgatctcaatccaggagatcttttagttcataaaaattatggcgttgcccgt
tttggtggccttattaggatggatataggtaaaatatctaatgactttttgttattagag
tatgctggtaatgataaactttatcttcctgttgataggctttctttaacacaacggttt
aaaagtgttaatgaatctttccctcagcttgatagacttggaagcacatcatggcaagca
agtaaagataaggctaaaaagtctattgaaaaagtagctgaagatataatagagatgtat
gcttggcgtaaagtagcaaagggttttacctacccaccagttggtgatttatacagagag
tttgaagcttcttttggttttgaagaaacaccagaccaagcaagagctattcaggatgtc
ttagctgacatggaaaagagtgaaccaatggatagacttgtttgtggagacgttggcttt
ggtaaaacagaagtagcattgcgtgcagcctttcgtgcagcctctgaaggtcgtcaggta
gcattactttgtccaacaactgtcctagctgaacaacattattatactttccgttcacgt
ctttcagggtttggtataaatgtaggtctattgagtcgatttgttcctcttcaaaaacaa
aaagagatttttaaagctgcatcaagcggtcagatagatgtactagtgggtactcataag
ctcctttctgactcagtttctttacctaacttaggattgcttattcttgatgaagaacag
cgatttggtgttaagcacaaagaaaaacttaaaaaaatgaaaaaaaatgtagatgtatta
accttaacagctacaccaatacctaggacattacagttatctatgtctggtatatgtgag
ctttctgttatagaaactgcacctcctgaacgtaaacctgtagccactgctattattaaa
aaaaataaagaaaagcttaaagaaattcttgaaagagagctagctagagaaggacaagtc
ttttgggtatataatcgtgtccaaggattagaacaaattgtaaactttgtaaaagaatta
gttcctgaagcacgtgtaggtgtagcacatgggcaaatgccagaaaaacaacttgaggaa
aatattcatgctttttggcatgcagaattagatattcttgtatgtactgctattattgag
tctggccttgatttcccaagagcaaatacattgattgttgatcaagcacatatgtttgga
cttggacaactatatcaactgcgtggaagagttggtcgttctgacaggcaagcatatgca
gtatttgttatttctgatcttgaaagtctttcagaacaagctcgtgaacgtctaagaatc
attttagaacttgattatcttggtgcaggttttcaagttgctatggaagatctaagaata
cgtggggcaggaaatatactaggagaagcacagtcaggacatattagtagagttgggatt
gagctctatttagaaatgcttgaagaagctgttactaagttaaaaggagaaggtgttaca
tcttatccagaaacagagttaactcttgggttgacagcgcatataccacaaaattatatt
tcagatagccatgagcgactacgttggtataaagcactatcgtctgctcaaagtgttatg
gctcggaatgaaattgagttagaacttcgtgatcgatttggtgtcttgcctaatgaactt
aaagcatttatagctgtgttaaattttaagcaatttcttactgagtcacaggtaataaaa
gctgaaatttatgaggataagattaaattagtatggccagaaaaacaaactgttgtatct
tttgataagttaatgctatttatttcagcacagccggataaagtaaagctttctccgcct
gctacactagaaataaagcttaatacaactttaccaatagaggatagacttatttctctc
caagaagagcttagtgttgtatttagttatgatagcataaaacaataa
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