Qingshengfaniella alkalisoli: FPZ52_04890
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Entry
FPZ52_04890 CDS
T06129
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lit
Qingshengfaniella alkalisoli
Pathway
lit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPZ52_04890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lit03400
]
FPZ52_04890 (mfd)
Enzymes [BR:
lit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPZ52_04890 (mfd)
DNA repair and recombination proteins [BR:
lit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FPZ52_04890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
AAA_30
SecA_DEAD
AAA_16
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QDY69030
UniProt:
A0A5B8J435
LinkDB
All DBs
Position
complement(942777..946223)
Genome browser
AA seq
1148 aa
AA seq
DB search
MAQTGSQHLTVGGAPEGFDARLVLKETDRTGGPVLHIARDDKRLEAMRAALAFFAPDMPV
LSFPAWDCLPFDRVSPNPDISAARMATLAALVHGAPKRFVLLTTLNAAMQKIPARDVLRE
AAFSAQVGRRIDEKGLKSFLVRMGFVQTPTVMEPGDYAIRGGIIDIFPPGESGPIRLDLF
GDVLDGARKFDPETQRTTERLRMIELAPVSEVILDEAAIMRFRQNYRIEFGAAGSDDPLY
EAVSAGRKHQGMEHWLPFFHERLETIFDYLPDVPVSFDDQLDAARVARWESIEDQYDTRK
EAMTAKGRLDSVYKPCPPGELYLDDAAWDDQLSDRRVLKFNPLAQATGPNVIDAGGRIGR
NFSPERQIENINLFSALSDHIQKERQSSAVVVASYSEGARERLKGLIEDEGILDPKEIKD
FRDIPDVTGGLFLAVWPLEHGFESKGLTVISEQDVLGDRLIRAPKRKKRAENFLTETQSL
SPGDLIVHVDHGVGRYNGLEVITAMGAAHECLALEYAGGDRLYLPVENIELLSRYGHEEG
LLDKLGGGAWQAKKARLKERIREIADKLIRVAAERALRTAPVMEPPDGMWDAFCARFPYQ
ETDDQLHAIEDVLTDMASGQPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAVIAPTTL
LARQHAQSFRERFRGFPLEVRALSRFIGAKKAQATRDGLARGTVDIVVGTHAVLAKAVRF
KNLGMLVIDEEQRFGVQHKERLKSMRTDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPP
VDRLAIRTYVSEFDSVTLREALLREHYRGGQSFVVVPRIKDLPEIEDFLKNQVPEVTYVV
AHGQMAAGELDDKMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIR
GRVGRSKTRAYAYMTTKPRMKLTPQAEKRLRVLGSLDSLGAGFTLASQDLDIRGAGNLLG
EEQSGQMREVGYELYQSMLEEAIAKIKTGEMEGLSESDDQWAPQINLGVPVLIPEDYVPD
LDVRLGLYRRLSGLSTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKAECKKAGIARLD
GGPKGATIQFHNDKFANPQGLVEFVQAQKGLAKVKDNKIVVRRDWAKDSDKIKGAFSIAQ
DLAKQAKG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaactggatcgcagcatctgacagtgggcggcgcgcccgaaggcttcgacgca
cggcttgtgttgaaagaaacggaccgcaccggcggtccggttctgcatatcgcgcgcgac
gacaagcggttagaggcgatgcgcgcagcgctggcgttcttcgcgcccgacatgcccgtg
ctcagcttcccggcatgggactgcctgccgtttgatcgtgtctcgccgaaccccgatata
tccgcggcgcggatggccaccctcgcggcgttggtccacggagcgcccaagaggttcgtg
ctgctgaccacgctcaacgcagcgatgcagaaaatcccggcacgtgatgtgctgcgcgaa
gcggcgttttccgcgcaggtggggcggcgcatcgatgagaaggggttgaagagcttcctc
gtccgcatggggtttgtgcaaacccctacggtgatggagccgggcgactacgcaatccgt
ggcgggatcatcgacatcttcccaccgggtgaaagcggacccatacgattggacttgttc
ggcgacgtgctggatggagcacgcaagttcgaccccgaaacccagcgcaccaccgaacgg
ctgaggatgatcgagttggcaccggtgtcagaggtgatcctcgacgaggccgcgatcatg
cggttccgacagaattatcgtatcgaattcggcgctgcgggctctgacgatccgctttac
gaggccgtcagcgcgggccgcaaacatcagggaatggagcactggctccccttcttccat
gaacggctggagacgatcttcgactatttgcccgatgtgcctgtcagtttcgacgatcag
cttgatgcagcgcgcgtggcaaggtgggagtcgatcgaggatcaatacgacacccgcaag
gaagccatgaccgccaaggggcggcttgattccgtctacaaaccatgcccacccggtgaa
ctgtatctcgatgatgcggcatgggacgatcagttgtcggatcgacgggtgttgaaattc
aatccgctcgcgcaggcgacgggtccgaatgtcattgacgcgggtggacgcatcgggcgt
aatttttcgccggagcggcagatagagaacataaatctattcagcgcattatcggatcat
attcagaaagaacgccagtcatccgccgtcgttgtcgccagctattccgaaggtgcgcgg
gaacgtcttaaagggctgatcgaggatgaaggcattcttgatcctaaggaaatcaaagac
tttcgagacattcctgatgtgaccggggggctcttcctcgctgtttggccgctggaacac
ggctttgaatccaaggggctgaccgtcatttcggagcaggacgtattgggcgaccgtctg
atcagggcacccaagcgcaagaaacgggccgagaacttcctgacggaaacccaaagcctc
agccccggagacctgatcgtccatgtggatcatggtgtcgggcgctataacgggctggaa
gtcatcaccgcgatgggtgcggcccacgaatgcctggcgctggaatacgcaggcggtgac
aggctgtacctgccggtagagaatatcgaacttctcagccgctacggacatgaggaaggg
ctgctcgacaagctgggcggcggtgcgtggcaggccaagaaggcgcgcctgaaagaacgc
atccgcgagattgccgacaagctgatccgggttgccgccgagcgggccttgcgcacggcg
cccgtgatggagccgccagacggtatgtgggacgcgttttgtgcgcggtttccatatcag
gaaaccgatgaccagttgcacgcgatcgaggacgtgctgaccgacatggcatccggccaa
cctatggaccggctgatttgcggcgatgtgggcttcggaaagaccgaggttgcgatgcgc
gcggcgttcatcgctgcaatgtcgggtgtgcaggtcgcggtgatcgcgccaacgaccctg
ctggcgcggcagcatgcgcaaagcttccgcgaacgttttcgcggattcccgctggaggtc
cgtgcattgtcacgcttcatcggggcgaagaaagcccaggcaacccgtgacgggcttgca
cgcggcacggtggatatcgtggtgggcacacatgcggtgctggccaaggccgtgcggttc
aagaaccttggcatgctggtgatcgacgaggaacagcgttttggcgtgcagcacaaggag
cgccttaaatccatgcgcacggatgtgcatgttctgaccctgaccgcaacgcccattccc
cgcacgttgcaattgtcgctgtcaggcgtgcgcgacctgtcgatcatcggcactccgcct
gtggaccgcctggcgatccgaacctatgtcagtgaattcgacagcgtgaccctgcgcgag
gcgctgttgcgcgaacattatcgcggcgggcagagcttcgtcgtcgtaccgcgcattaaa
gacctgccggagatcgaggatttcctgaagaaccaggtgcccgaagtcacctatgtcgtc
gcgcatggccagatggctgccggtgaattggacgacaagatgaacgcattttatgacggc
aagttcgatgtgcttctggcaacgacgattgtggaatctgggctcgacatcccgacggcc
aatacgatgatcgtccatcgcgcggacatgttcgggttggcgcagctttaccagatccgt
gggcgcgtgggccggtccaagacccgtgcctatgcctatatgactaccaagccccgtatg
aagctgacgccgcaggccgaaaagcggctgcgtgttctggggtctctcgacagccttggg
gcagggtttacgctggcctcgcaggatctggacattcgcggggcagggaacctgctgggt
gaagaacaatccggccagatgcgcgaagtggggtatgaactttaccagtcgatgctggaa
gaggcgattgccaagatcaagacgggcgaaatggagggcctgtccgagtctgacgaccaa
tgggcgccgcagatcaatctgggtgttccggtgctgatccccgaggactacgtgccggat
ctggatgttcggctggggctgtatcgacgcctgtcgggcctgtccacgaaggtcgagctg
gaaggtttcgcggccgagttgatcgaccggttcggcaagctgccgaaagaggtcaacacg
ctgctgctggtcgttcggatcaaggcggaatgcaagaaggccgggatcgcgcggctggat
ggcgggccaaaaggcgcgactatccagttccacaacgacaaattcgccaacccccagggg
ctggtcgaattcgttcaggcgcagaaggggctggcaaaggtcaaggacaacaagatcgtc
gtgcgtcgtgactgggccaaggacagcgacaagatcaagggcgcgttttcgatcgcgcag
gatcttgcgaaacaggcgaagggctga
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