Lysinibacillus irui: OU989_11865
Help
Entry
OU989_11865 CDS
T09550
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
liu
Lysinibacillus irui
Pathway
liu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
liu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OU989_11865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liu03400
]
OU989_11865
Enzymes [BR:
liu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OU989_11865
DNA repair and recombination proteins [BR:
liu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OU989_11865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
mRNA_cap_enzyme
Rad10
Motif
Other DBs
NCBI-ProteinID:
WDV05018
LinkDB
All DBs
Position
complement(2359724..2361541)
Genome browser
AA seq
605 aa
AA seq
DB search
MKPMLLTESNDIPNGDEWLYETKYDGFRCLLIWDEQPILMSRNGRNLNYLFPEILAFCQQ
IYASVKAFLPLTLDGEIVYLSNHYKSEFAVVQKRGRMQNEDVIEAHAKTFPFRYLVFDVL
TFKGESLHNRYLKTRKEQLAKFASKVLLPSVDFEDRSSIQIVEGEEESENLWQAIKVYNG
EGMVAKKKTSKWLENTRSNHWLKIKNWRYVTVVVTQYNHSNGFFHGSIYKDGQLREVVTF
KHGMTEEEHQTLVTFFQTNGQRQKELWHLEPSICIDVACIDFDGSKLREPRFHVFRLEQT
PEDCQWQHMQRQLFPIPDSVPITHPDKPVWPEIGITKDHYLSYLQSMSPYLLPFLKDRPL
TLIRFPHGVPGESFYQKSKPDKMPNFVATAVMDTIDYIVCNNLETLLWLGNQLALELHIP
FQTFQSMYPTEIVFDLDPPSAEHFSLAVAGALDLKNIIDYFQLQSFVKTSGGKGLQLYIP
LPTNTFTYEEVRVFTEFVCRFLCEQKPNLYTIERLKKNRHEKLYLDYVQHAEGKTIIAPY
STRGNPKGLVATPLNWDEVNENLKPEFFTIPAVIERMKKIGNPFQTFREVGEKQDFRAVL
AQLKQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttttaacggaatcaaacgatattccaaatggggatgagtggttatat
gaaacgaaatatgatggttttcgttgcctgttaatatgggatgaacagccgatactcatg
agccgaaatggtcgcaatttaaactacttgtttcctgagattttagctttctgtcagcaa
atatatgcatctgtaaaggcttttttgccattaaccttggatggagagattgtttattta
agcaatcattataaaagtgaatttgcagttgttcaaaaaagagggagaatgcaaaatgag
gacgtcatagaggcacatgcaaagacctttccttttcgttatctcgtatttgatgtatta
acttttaagggggagtcccttcacaatcgctatttaaaaacaaggaaggagcaattggcg
aagtttgcttcaaaggtactattaccgagcgtcgactttgaggatagaagctcgattcaa
attgtagagggggaggaagagagcgagaatttatggcaggcaataaaggtttacaatggt
gagggcatggtggcaaagaagaaaacaagtaagtggctggaaaacactcgttcaaatcat
tggttaaaaattaaaaattggcgatatgtgacggttgtagtcacacaatataaccatagc
aatggcttttttcatggctcaatttataaggatggtcaattgcgcgaggttgtgacgttt
aaacatggtatgacagaagaagagcaccaaacacttgttacattttttcagaccaatgga
cagcgccaaaaagagttatggcatctagaaccatctatttgtatcgacgttgcttgtatt
gattttgatggtagtaagctccgggaacctagatttcatgtctttcgattggaacaaaca
ccggaggattgtcaatggcagcacatgcaacgacagctttttccgattcccgattctgtg
cctattactcacccagacaaacctgtttggccagaaattggcataacgaaggatcactat
ttgtcctatttacaaagcatgtcaccatatttattaccctttctaaaagaccgtcctctc
actttaattcgttttccacatggtgtgccaggcgaaagcttttatcaaaaaagtaaacca
gataaaatgcctaactttgtggcaacggcggtgatggatacgattgattatattgtatgt
aacaacttagaaactctgctgtggctaggtaatcaactggcattggagctgcatattccg
tttcaaactttccaatccatgtacccgacagaaatagttttcgatttagacccaccctca
gctgaacatttttcattagctgtagctggtgcactggatttaaaaaatatcattgactat
tttcagctacaatcatttgtcaaaacatcaggtggaaaaggcttacagctctatataccg
ctaccaaccaacacctttacctatgaggaggttcgggtgtttacagaatttgtttgtcga
tttttatgtgagcaaaagccgaatttgtatacaattgagcgattaaaaaagaatcgccat
gaaaaattatatttagattacgtgcagcatgcagaggggaagaccatcattgccccctat
tctacgagaggcaatccaaagggcttagtcgcaacacctctaaattgggatgaagttaat
gaaaacttaaaaccagagttcttcacgattcccgctgtcatagagcgcatgaaaaaaata
gggaatccctttcaaacatttcgagaggtaggggagaagcaggattttcgagctgtattg
gctcaattaaaacaataa
DBGET
integrated database retrieval system
