Lichenihabitans sp. PAMC28606: LGH83_01330
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Entry
LGH83_01330 CDS
T07621
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LGH83_01330 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_01330 (ligD)
Enzymes [BR:
liz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LGH83_01330 (ligD)
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LGH83_01330 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UDL94945
LinkDB
All DBs
Position
complement(285391..288132)
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AA seq
913 aa
AA seq
DB search
MNTKLASYTSKRDFEKTAEPTGAAAVIPSKALRFVIQKHDATRLHYDLRLEVDGVFKSWA
ITRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVLLWDRGTWTPEGMTAQGG
LESGDLKFTLHGEKLHGSWVLVRMKHDRMGGKRTNWLLIKHRDDAAHEGDADALLSQNTS
VASGRAMEDIAAGRGKPPKPFMTKASKAAKPDAVWQSNRAADDATPQAGKKPRKPSAAKA
AAPKSSKAATSKAKLVAPEWPRFVEPQLCRLVDHPPSDAGWAHEVKFDGYRVQLNVRGGT
AVLRTRKGLDWTDKFKAIAAAGEALPDVIIDGEIVALDHQGAPDFAALQAAISDRKTDEL
VFFAFDLLMTGDEDLRGQPLSIRKSRLKGILTDTPHDDDRLRFVDHFAAGGDAVLKAACR
MSLEGIVSKRLDAAYVSGRSESWTKAKCRGGHEVVIGGWTDTDGKFRSLLAGVHKGDHLV
YVGRIGTGYGQAVVSQLMPRLEQNASAKNPFTGLNAPKAAKGIHWLAPDLVAEIHYAGWT
GDGMIRQAAFKGLRDDKPAAEVVAEKPAPADTPLSEPPVQPTRGTKPNKTAAKPSGSEAT
PPAAAARHRPAANAVVMGVSITHPDKALWPDDGAGQAVTKLDLARYVEAIGPWMIEHVKG
RPCSAVRAPDGIGGQEFFQRHAMPGTSSLLTLVTVKEETKPYLQVDRVEGLVALAQTGAI
ELHPWNCQPDQPEVPGRLIFDLDPGPEVDFEAVIHAARDIKDRLDDLGLVSFCKTTGGKG
LHVVTPLTMPRKAGPDWAATKDFCRRICADMAAAHPDRYLVNMAKKLRTGKIYLDYLRND
RTATAVAPLSPRARPGATVSMPLTWSQVKTGLDPAKFTIRTVPALLSKSIAWADYDEGAR
SLERAMQRFKVDA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
gtgaatacgaaactcgcgtcctacacctcgaagcgcgacttcgaaaagacggcggaaccg
accggcgccgctgccgtcatcccgtcgaaggcgctgcgcttcgttatccaaaagcatgat
gccacgcggctgcattacgatttgcgcctcgaggtcgacggcgtctttaagtcctgggcg
atcacgcgcggcccctcgctcgacccgcacgacaagcgcctcgctgtcgaggtcgaggac
catccgctcgactatggtgatttcgaaggcacgattccaaaaggtcaatatggcggcggt
acagtcctgctgtgggatcggggtacatggaccccagaaggtatgacggcccaggggggg
ctggagtcgggcgacctcaaattcaccctgcacggcgagaagctgcacgggtcgtgggtg
ctggtccgcatgaaacacgatcggatggggggcaagcggacaaactggttgctgatcaag
catcgtgatgacgccgcacatgagggcgatgcggacgcgcttctgtcgcaaaacacctcg
gtcgcctccggccgcgcgatggaggatatcgcggcaggccgcggcaaaccaccgaagccg
ttcatgaccaaagcctcgaaagccgccaagcccgacgctgtttggcagtcgaatcgcgcg
gccgacgacgccacacctcaggccgggaaaaagcccaggaaaccatcagccgccaaagcg
gcagcgccgaagtccagtaaagcagcgacatcgaaagcgaagctggttgcgccggaatgg
ccgcgtttcgtggaaccgcaactctgtcgattggtcgaccatcccccgagcgacgccgga
tgggcccacgaggtcaagttcgatggctatcgcgtgcaactcaacgtgcggggtggaacg
gcggtcctccggacccggaaggggttggattggaccgacaagttcaaggcgatcgccgcg
gccggagaagcgctgcctgacgtcattatcgatggtgagatcgtggcgctcgatcatcag
ggagcgccagactttgcggctttgcaggctgctatctcggatcggaaaaccgatgagctc
gtcttctttgccttcgatcttttgatgacgggcgatgaggatttgcgcggacagccgttg
tcgatccggaaatcccgcctgaagggtatcctcaccgacactccacatgacgacgaccgc
ttgcggttcgtcgaccatttcgcggccggcggcgacgcggtactcaaggcggcgtgtcgc
atgtcgctcgagggaatcgtctcgaagcggctcgacgccgcctatgtgtcgggccggtcc
gagagttggaccaaggccaaatgccgaggaggccatgaggttgtgatcggcggctggacc
gatacggatggcaagttccgttcgttactggccggcgtgcataagggcgatcatctcgtc
tatgtggggcggatcggaaccggctatggtcaggcggtggtgtcgcaattgatgccgcgc
ctcgaacagaatgcctccgccaaaaacccgtttaccggcctcaacgctcccaaagccgcc
aagggtattcattggctcgcgcccgacctcgtggccgaaatccactatgcgggctggacc
ggcgacggcatgatccggcaggccgccttcaagggactacgagacgacaagcccgcagcc
gaggtcgtggccgaaaaacccgctccggccgatacgccgctatcggagccgcccgttcag
ccgacgcgcggcactaaacccaacaaaaccgccgccaaaccgtccgggagcgaagcaacg
ccgcctgccgcagccgcccgccaccggcctgccgctaacgccgtggtgatgggcgtcagc
atcacgcatccggataaggcgctctggcccgatgatggcgcgggccaggctgtcaccaag
ctcgacctcgcccgctatgtcgaagccatcgggccgtggatgatcgagcatgtcaaaggt
cgcccatgctcggccgtgcgcgcgccggatgggatcggcggacaagagtttttccaacgc
catgcgatgccgggcacatcgagcttgctgacgctggtgaccgtgaaggaggagacgaag
ccctacctgcaggtcgatcgagtcgaaggcttagtcgcactggcacagaccggcgcgatc
gaattgcacccatggaactgtcagccggatcagcctgaggtgccaggtcgattgattttt
gatctcgacccagggccggaggtcgatttcgaggctgtcatccatgcggcacgtgacata
aaggacaggctcgacgatctcgggctggtgtcattctgcaagacgaccggcggcaagggg
ctacacgtcgtgacaccgctgacgatgccgaggaaggccgggccggactgggccgccacg
aaggacttctgccgacgaatttgcgccgacatggcggcagcgcatcccgatcgctatctc
gtcaacatggccaagaagctgcggacgggaaagatctacctcgattatttgcggaacgac
cggaccgcgacggcggtggcgcctttgtcgccgcgcgcaaggcccggcgcgaccgtatcg
atgccgttgacgtggtcgcaggtcaaaacggggctcgacccggccaaatttacgatccgc
accgtgccggccctgctatcgaaatcgatcgcttgggccgattacgatgagggcgcgcgc
tcactcgagcgggccatgcaacgattcaaggttgatgcgtga
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