Lichenihabitans sp. PAMC28606: LGH83_10170
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Entry
LGH83_10170 CDS
T07621
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz01501
beta-Lactam resistance
liz01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LGH83_10170
01503 Cationic antimicrobial peptide (CAMP) resistance
LGH83_10170
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
liz02000
]
LGH83_10170
01504 Antimicrobial resistance genes [BR:
liz01504
]
LGH83_10170
Transporters [BR:
liz02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
LGH83_10170
Antimicrobial resistance genes [BR:
liz01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
LGH83_10170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF
Patched
Motif
Other DBs
NCBI-ProteinID:
UDL93003
LinkDB
All DBs
Position
complement(2139080..2142277)
Genome browser
AA seq
1065 aa
AA seq
DB search
MISSVFVDRPRLAIVIAIIITIAGGLALTRIPVSQFPDIVPPQVQVTANYPGASASVVES
AVAQPLEAQIVGVDQMLYMKSSSGNDGSYNLTVSFALGSDPNIDTVNVNNRVQTALSQLP
SEVQLQGLTVQKRSSAVLQFMMFYSDNGQQDPLFITNYATINVLDELSRTPGVGQASLFG
KLKYSMRIWFDVQRLNNLGMAPSEIINAIESQNVQAPVGRIGAQPIDNDQQFQFNLQTKG
RLTTPEEFGAIVVRANPDGSLLRVSDVARVEMGAQNSDNFSRLDGKPAVALGIYLSPGAN
AVQTAAAVNATLAKLSPRFPEGLKYKTVYDSTTFVTDTIHEVLKTIAEAFVLVVIVVFLF
LGNFRATIIPAVAVPVSLIGTFAVLLVIGYSANTVSLLAMVLAIGIVVDDAIVVVENVER
VMEEDPSLTPKQATKKAMGEITAPIIAITLVLLSVFVPIAFIPGLTGILFRQCAVTISIA
MLISAINALTLSPALCGVFLRPGSHKGGIMGKVLGGIDKTRHGYTSVVKRLVRFSVISLL
IIGGFAVGIYFAAARTPTGFLPEEDQGAFFVVIQLPDGASVSRTSETVKTMEDMLLKMPQ
VADTFSVIGFSFLDSVSEPNAGFMVVRLKPFEDRTAAADSVQAMIGRVFGSAQQIRTGNV
IAFNLPPIIGLSTGGGFEYDLEALEGQDPAVMGNVAQGLVAAANGDKQLARVFTTFTASN
PSLYLDIDREKASALGVNIGDIFNVLQSSLGGTYINNFNLYGRTWQVNIEGEAKDRRDIE
SIWQLYVKNKQGADVPLRSLASLRVVQGPQVITRYNNYRAIPIQGSPAAGVSSGAALAAM
AETSNKTLPNGYSYEWTGTAYQEYQANGQTSVVLGLAILFAYLFLVSLYESWIIPIPVLL
SVAVGVFGAFIGIIVGGLVLDLYAQVGLVVLIALAAKNGILIVEFAKEQREAGHSIIDSA
IAGASMRFRAVIMTSIAFVLGLVPLVIAHGAASVSRRDVGTPIFAGMIAASLIGIFVIPM
LYVTFQYFSEWIDRRRGIDPDVKYGSKPVVADADGQHSAPVAPTS
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgatctcttccgtcttcgtcgatcgcccccgactcgccatcgtgatcgcgatcatcatc
acgatcgcgggcggcttggcgctgacccgcatcccggtctcgcaatttcccgatatcgtg
ccgccccaggttcaggtgaccgccaactatcctggtgcgtcggcctcggtcgtcgaaagc
gcggtggcgcagccgctggaagcgcagatcgtcggcgtcgaccagatgctctacatgaag
tcgtcgagcggcaacgatggcagctacaatctgacggtttccttcgcgcttgggtcggat
ccgaacatcgacacggtcaacgtcaacaaccgcgtccagaccgccttgtcccagttgccg
agcgaggtgcagctgcagggtctgacggtgcagaagcgctcgtccgcagtcctgcaattc
atgatgttctacagcgacaacggtcagcaggacccgctcttcatcacgaattacgccacg
atcaacgtgctcgatgagttgtcgcggacgcccggtgttggtcaggcttcgctgttcggc
aagctcaaatattccatgcggatctggttcgacgtccagcgtttgaacaatctcggcatg
gcgccctctgaaatcatcaacgccatcgagtcgcaaaacgtccaggctccggttggacgc
atcggcgcacaaccgatcgacaacgatcaacagtttcagttcaatcttcagaccaagggc
cgtttgaccacgccggaggagtttggcgcgatcgtggttcgagccaacccggatggatcg
ctgctccgcgtcagcgatgtggcgcgcgtcgaaatgggcgcccagaattcggacaatttc
agccggctcgacggaaagcccgccgtggcgctcggcatctatctgtcgccgggtgccaat
gcggtacagaccgccgccgccgtcaacgcgacgctggccaaactgtcgccgcgattcccc
gagggtctgaaatacaagaccgtctatgactcgaccaccttcgtgaccgacacgatccac
gaggtgctgaagacgattgctgaagccttcgttctggtcgtgatcgtggtgttcctgttc
ttgggcaacttccgcgccacgatcattccggcggtcgcggtgccggtgagcctgatcggg
acgttcgcggtgcttctggtcattggctattcggccaatacggtgtcgctgctggcgatg
gtgctggccatcggcatcgtggtcgacgacgcgatcgtcgtggtcgagaatgtcgaacgg
gtcatggaagaggacccgagcctcacgcccaaacaggcgaccaagaaggccatgggggag
atcacggcgccgatcatcgcgatcacgctggtgttgctgtcggtgttcgtacccatcgcc
tttattccgggcttgaccggcatcctctttcgccaatgcgccgtcacgatctcgatcgcg
atgttgatctcggccatcaatgctttgacgctttcgcccgcgctctgcggcgtcttcctt
cgccccggcagccacaagggtggcatcatggggaaggtgctgggcgggatcgataagacg
cggcatggctacacatctgtggtgaagcggctggtgcgattcagcgtgatcagcctgctg
atcatcggcgggttcgcggtcggcatctacttcgcggccgcgcgaacgccgaccgggttt
ctacccgaggaagatcaaggcgccttcttcgtcgtgattcagcttccggatggcgcgtct
gtgtcgcgcacgagcgaaaccgtgaagacgatggaagacatgctgctgaagatgccgcag
gtcgccgacaccttctcggtcatcggattctcgttcctcgacagcgtgagtgagccgaac
gccggcttcatggtggtgcggctcaaacccttcgaggaccggaccgcggcggcggattcg
gttcaggcgatgattggtcgtgtgttcgggtccgcgcagcagatccgcaccggcaacgta
atcgcgttcaacctgccgccgatcatcggtctgtcgaccggcggcggctttgaatatgat
ctcgaagcgctcgaaggtcaggatccggccgtgatgggcaatgtcgcgcaggggctggtg
gcggccgccaacggcgacaagcaactcgcccgcgtcttcacgacgttcacggcctccaac
ccatccctctaccttgacattgaccgcgaaaaagccagcgcgctcggggtcaatatcggc
gatatcttcaacgtgctgcaatcctcgctaggcggcacctacatcaacaacttcaacctc
tacggccggacctggcaggtcaatatcgagggtgaagccaaggatcggagagacatcgag
tcgatctggcagctctacgtcaagaacaagcaaggcgcggacgtgccattgcgatcgctc
gcctcgctgcgcgtcgtgcaagggccgcaggtgatcacgcgctataacaactatcgcgcg
atcccgatccagggcagtccagcggcgggcgtttcatccggcgcagccctcgcggccatg
gcggagacgtcgaacaagactctgccgaacggctatagctacgaatggaccggcacggcc
tatcaggaatatcaagccaacggacaaaccagcgtcgtgctcgggctggcgatcctgttc
gcttacctgtttctggtcagcctttatgaaagctggatcatcccgatcccggtgctgctc
tccgtcgcggtcggtgtgttcggggccttcatcggcatcatcgtgggtggtctggtgctc
gatctctacgcgcaggtcggtcttgtggtgttgatcgcgctggcggccaagaacggcatt
ctgatcgtcgaatttgccaaggagcagcgcgaggccggacattcgatcatcgattcagcg
atcgccggcgcgagcatgcggttccgcgccgtcatcatgacctcgatcgccttcgtgctc
gggctcgtcccgctcgtcatcgcccatggcgcagcatcggtcagccggcgtgacgtcggc
accccgatctttgccggcatgatcgcggccagcctcatcggcatcttcgtgatcccgatg
ctctacgtgacgttccagtatttctcggagtggatcgaccgacgtcgcggcatcgatccg
gacgtcaaatatgggtcgaagccagttgtcgccgacgccgacggccagcattcggcgccc
gtcgctcccacatcgtga
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