Lichenihabitans sp. PAMC28606: LGH83_12890
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Entry
LGH83_12890 CDS
T07621
Symbol
glgX
Name
(GenBank) glycogen debranching protein GlgX
KO
K01214
isoamylase [EC:
3.2.1.68
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz00500
Starch and sucrose metabolism
liz01100
Metabolic pathways
liz01110
Biosynthesis of secondary metabolites
Module
liz_M00565
Trehalose biosynthesis, D-glucose 1P => trehalose
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
LGH83_12890 (glgX)
Enzymes [BR:
liz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.68 isoamylase
LGH83_12890 (glgX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_77
CBM_48
Alpha-amylase
Isoamylase_C
Motif
Other DBs
NCBI-ProteinID:
UDL93481
LinkDB
All DBs
Position
complement(2725228..2729442)
Genome browser
AA seq
1404 aa
AA seq
DB search
MSLGVRRVSAGSPEPLGVTLQGDGLNVAVFSANADAIDVCLFDETGDQELERIRLFERTG
DVFHAHISGVVEGARYGLRAHGPYDPGRGHRFNSAKLLIDPHALALDRPFVLHPSMYGFV
AGSDARDDTDSAFAMPKGVVVAPTGVEPWRDGAGWPRTVISELHVRGYTKLHPGVPEALR
GTFAGLASPAGVDHLVKLGITTVELMPAAAWIDERHLPPLGLTDYWGYNPVAFSVPDLRL
APGGWAEVRAATAALNAAGIEVILDVVYNHTGESDELGPTLSLRGLDNASYYRLRPDNPA
LYINDSACGNILAADRAPVVRLVLDSLRNWARLGGINGFRFDLATTLGRRAEGFEQQGSL
LTAIEQDPLLRNLKLVAEPWDMGPGGYRVGGFSAPWAEWNDRYRDAARRFWRGDAAPAEL
APRVTGSADLFWAKRRPSRSINFITAHDGFTLRDLVSYTGKRNDRNGEQNRDGGHQNWSW
NCSIEGETDDHGVNAGRLRDQRNLLATLLLSRGTPMLGPSVERGLTQGGNNNAYAQDNET
AWTDWSRPDELSSFIRQLIAIRLANPAITADHFLTGDFAEGQRYPDIEWRRPDGQAPQAW
DWEHPATRTLIEVLNAEGSEDETPNRVTIIHHSGFEPLQVILPEVRTGHSWRLVLDTAEP
DAATTRRHAGESGLDVAPRSVVALVEEPGSVTGTTSRPLAPELVDRLAIAAGIAPDWSEM
NGVRHVVTGQTKLALLTSMGLAVGSSGEVRDSLDLLSQRRERRLLPASLVAWEGQRPIVR
VAASRRLGGRLRLTIAREDGSSDSIWLNLDDAQRSAAVGSDGRPAPAYHLPIPSQPIGRH
RLWVDSDPTIICALTVAPSRCYLPPELLGGHKAFGIAAHLYTLRSAADQGIGDFSTLARF
ADAAGRHGAELVGLNPLHALFAEHRDRASPYHPSDRRYLDPIYIDVTSPDVVCGSPLVKK
ALDDQAGAIAALRALKNVAYPGVWSLKKTVLRVAFDVFDARRKQSRDDADIRDFESFARD
GGTSLAHFAAFMAIEAERQGQPWWEWPDGLRRPEAAGIAEFAGTNTGDFFFQIYLQWLAD
RQFGAAAAAGRAAGLNFGFYRDLAVGTANDGAESWANQGVYATGVSVGAPPDAFSANGQT
WALPPPNPAVPGRAWLDTFATLLAANMRHAGALRIDHAMGLSRLFWIPDNAPGSAGAYVH
YPMEEMIGELSLESHRAKCLVIGEDLGTVAPGFRDRMAAADILSYRVVFFEREKEGLGFD
PASAYPEKAVACVSTHDLPTLSGWWHGLEIEERRAIGSFTPEEADKAEADRAIERVKLAE
VLGAPGLADNPDAGSELVGAIHRFVGSTPSMLVMAQADDLVGERVAVNLPGTDNERPNWR
RRLDVDVSDLFELPVAKASLPLRR
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttggggttcgccgggtatcggcgggttctcccgagccgctcggggtgacactg
cagggcgatggcttgaacgtcgccgtgttttcggcgaatgccgatgcgatcgacgtctgt
ctcttcgatgagacgggcgatcaggaactcgaacgcatccgcttgttcgagcggaccggg
gacgtgttccacgcgcatatttccggggttgtcgagggcgcccgttacggattgcgggcg
catgggccgtatgatcccggccgggggcatcggttcaattccgccaaactgctgatcgac
ccgcatgcgctggcgctcgatcggccgttcgtgctccatccctcgatgtacgggttcgtg
gccggtagcgatgcccgtgacgacaccgacagtgcgttcgcgatgccgaagggcgttgtt
gtggcgcccaccggagtcgagccgtggcgtgatggcgccggatggccccgcacggtcatc
agcgaattgcatgtgcggggctacaccaagctgcatcccggcgtgccagaggcattacgc
ggcacattcgcgggtttggcgtctccggcaggcgtggatcatctcgtcaaactcggcatc
accacggttgaattgatgccggccgcggcctggatcgacgagcggcatttgccgccgctc
ggattgaccgattactggggctataatcccgtcgccttctcggttcccgacctgcgtctc
gcgcccggcggctgggccgaggtccgcgccgcgaccgccgccttgaatgctgccggtatc
gaggtcatcctcgacgtcgtctacaaccataccggcgagagcgacgaactcggcccgacc
ttgtcgctccgtggtctcgacaacgcgtcctattatcgacttcgccccgacaatccggcg
ctctacatcaacgattccgcctgcggcaacatcctggcggcggatcgcgccccggtggtg
cgcctcgtgctcgactcgctccgcaactgggcgcggctgggcggcatcaacggcttccgt
ttcgacctcgcaacgacgctcggtcgccgggccgagggcttcgaacagcaggggtcgctg
ctgaccgccatcgagcaggatccgctgctccgcaatctcaagctcgtggccgaaccctgg
gacatggggccgggcggttaccgggtgggtggattctcggccccttgggccgaatggaac
gatcgctatcgggatgcggctcgtcgcttctggcgtggcgacgccgccccggccgaactc
gcgccccgcgtgaccggctcggccgatctgttctgggccaagcggcgcccctcgcgcagc
atcaacttcatcacggcccatgatggtttcacgcttcgcgatctcgtctcgtatacgggc
aagcgaaacgatcggaacggcgagcagaaccgcgacggcggccaccagaactggtcctgg
aactgcagcatcgaaggcgaaacggacgatcacggcgtcaatgccggtcgcctgcgggat
cagcgcaacctgctcgcgaccctgttgttgtcgcgcgggacacccatgctcggccccagc
gtcgaacgcggcctgacacaaggaggcaacaacaacgcctacgcgcaggacaatgagacg
gcctggaccgactggtcgcgtcccgacgagctctcgagcttcatccggcaactgatcgcg
atccgcctggccaatccggccatcacggcggaccattttctgaccggcgactttgccgag
ggtcagcgttaccccgacatcgaatggcggcggcctgatgggcaggctccccaggcctgg
gattgggagcatcccgcgacacggacattgatcgaggttctcaacgccgaaggctccgag
gatgagacgccgaaccgcgtcaccatcatccatcacagcggcttcgagccgcttcaggtt
atcttgccggaagttcgaaccgggcatagttggcggcttgttctcgatacggccgagccc
gacgccgccacaacgcgccgccacgcgggcgagagcggccttgatgtcgcgccccgaagc
gtcgtggccctggtcgaagagccggggagcgtcaccggaaccacctcgcgtcctctcgcg
cctgagcttgtcgaccggctcgcgattgcggccgggatcgcgcccgactggtccgagatg
aatggtgttcgtcatgtcgtcaccggccagaccaagctggccttattgacaagcatgggc
ctcgcggtcgggtccagcggcgaggtgcgcgatagcctcgatcttctctcacaacgccgc
gagcggcgtcttctgccggccagtctcgtggcgtgggaaggccaacgaccgatcgtgcgg
gtcgcggccagccgacgcctcggcgggcggttgcgtcttaccatcgcgcgggaagatgga
tcgagcgattcgatttggctcaacctggacgatgcccagcggagcgcagcggtgggatcc
gacgggcgccctgcacccgcctatcacctacccatccccagccagccaatcgggcgacat
cgcctctgggtcgatagcgatccgacgatcatctgtgcgctgacggttgcgccctctcgg
tgctacctgcctccggaactgctcggcggccacaaagccttcgggatcgcggcgcatctc
tatacgctgcggagcgctgcggatcagggcattggcgacttttcgacgctcgcccgtttc
gccgatgcggccgggcggcacggggccgaactcgtcggcctcaatccgcttcatgcgctc
ttcgccgagcatcgcgatcgcgctagcccttatcacccgtccgatcggcgctacctcgat
ccgatctacatcgatgtgacctcgccggacgtggtctgcggttcgccgctggtcaaaaag
gcgttggacgatcaggctggcgccatcgcggcgctgcgggcgctcaagaatgtcgcctat
cccggcgtctggtccttgaaaaagacggtgcttcgcgtcgccttcgacgtgttcgatgcg
cgtcgcaaacaatcgcgcgacgacgccgacattcgggatttcgaaagcttcgcccgagat
gggggaacgtcgctcgcccatttcgccgccttcatggcgattgaggcagagcgccaaggt
cagccctggtgggagtggccggacgggttgcgacgaccggaagcggctgggatcgcggaa
tttgcgggcaccaacaccggcgacttcttctttcagatctatctgcaatggctggcggat
cggcagttcggtgcggccgctgccgcgggccgcgctgcgggcttgaacttcggcttttat
cgcgatctcgcggtcggcacggcgaatgacggggccgaatcctgggccaaccagggcgtc
tatgcgaccggcgtctcagtcggagcgccgccggatgccttttcggccaatggccagacc
tgggcactcccgccgcccaacccggcggtcccgggccgggcttggctcgacacgttcgcg
accctcctggccgccaatatgcggcatgcgggagcgctgcggatcgaccacgccatgggt
ctgtcacggctgttctggatccccgacaatgctccgggatcggccggagcttatgtgcac
tatccaatggaagaaatgatcggcgagttgtcgctcgagagccaccgggccaaatgtctc
gtgatcggcgaggatctcgggacagtggcaccaggcttccgcgaccgaatggcggcagcc
gatatcctgagctatcgcgtcgtgtttttcgagcgcgagaaggaggggcttggtttcgat
ccggccagcgcctatcccgaaaaggcggtcgcctgcgtgtcgactcatgatctgccgacg
ctctcgggctggtggcatgggctcgagatcgaggagcgtcgcgccatcggctcgttcacg
ccggaggaggccgacaaggccgaggcggaccgcgcgatcgaacgcgtgaagctggccgag
gtcctcggcgcaccgggtctcgccgacaatcccgatgctggttccgaactggtcggcgcc
attcaccgcttcgtcggctcgaccccctcgatgctggtgatggcgcaagccgatgatctc
gtgggcgaacgcgtcgccgtcaaccttccgggcaccgataacgagcgcccgaattggcga
cggcgcctcgatgtcgatgtgagcgatttgttcgagcttccggtggcgaaggccagtctg
ccgctccgccgttga
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