Lotus japonicus: Lj0g3v0361239.1
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Entry
Lj0g3v0361239.1 CDS
T04348
Symbol
Lj0g3v0361239.1
Name
(Kazusa) -
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Lj0g3v0361239.1 (Lj0g3v0361239.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
Lj0g3v0361239.1 (Lj0g3v0361239.1)
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lj0g3v0361239.1 (Lj0g3v0361239.1)
Spliceosome [BR:
lja03041
]
Complex A
U2 snRNP components
U2 related factors
Lj0g3v0361239.1 (Lj0g3v0361239.1)
Complex B
Lj0g3v0361239.1 (Lj0g3v0361239.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
LinkDB
All DBs
AA seq
900 aa
AA seq
DB search
MEDEQRRLDDEMEKRRRRVQEWQELRRKKEEAEREKGGEASAIELESGKTWTLEGESDDE
DGTGTGKLNTDMDVDEDDKSADKEPGDSMVVDVDNGAVASDLQNGAADASPDEEIDPLDA
FMNSMVLPEVEKLNNAVTSSFVDKAADLNPKDKGDERSSSAHPRKGSNKSIGRIIPGEES
DTEYADPETEGDDVDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFRKNFYIEVREISKM
TPEEVSVYRKQLELKIHGKDVPKPVKSWNQTGLTSKILETIKKHNFEKPMSIQAQALPTI
MSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIK
KFTKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYL
VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR
SVVNKDISQLVEVRPENERFFRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPC
LSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINYDVSNHYEDYVHR
VGRTGRAGRKGCAITFISEEEAKYAPDLVKALELSEQTVPDDLKALADSFMAKVNQGLEQ
AHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGDVSQHPAL
AQFLAASKVNTSVMHTPISAAQLIPNGGLPVPLPILPTSTVLPGTGLPLATTDGAARAAL
AAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ
FVNPGKIPGPGERKLYLFIEGPSEQSVKRAKTELKRVLEDITNQALQLPGGSQPGKYSVV
NT seq
2704 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgaacaaaggaggttggatgatgaaatggaaaagcggaggaggagagttcaa
gagtggcaagagctaagaaggaagaaagaagaagcagaaagagaaaagggtggtgaagca
agtgctattgagctcgagtctggaaagacctggacacttgaaggggaatcggatgatgaa
gatggaacaggtactgggaagctaaatacagatatggatgtagatgaagatgacaaatct
gctgataaggaacctggggactcgatggttgtagatgttgataatggagcagttgcatct
gatttacagaatggggctgctgatgcttctcctgatgaggaaatagatccattggacgct
ttcatgaattcaatggttcttcctgaagttgaaaagctgaacaatgctgttacttcgtca
tttgttgataaagctgcagacttaaacccgaaggataaaggggatgagcgaagtagtagt
gcacatccaaggaaaggttcaaataaatctattggcagaataattcccggtgaagagtct
gacactgaatatgcagatcctgaaactgagggggatgatgtagatgaagatgatgatgag
ttcatgaaaagagtgaagaagacaaaagttgagaagctttctattgttgaccactcaaag
attgactatataccattcagaaagaatttttatattgaagtgagagagatctcgaagatg
actcctgaagaagtttcagtatacaggaagcagttggagttgaagatacatgggaaggat
gtgcctaagcctgtaaaatcatggaaccagactgggctgactagcaaaattttggagaca
ataaaaaaacataacttcgaaaagcctatgtctattcaagctcaggcgctgcctacaatt
atgagtggtcgagattgcataggtattgctaaaactgggtcaggtaaaacacttgctttt
gttctgccaatgttgaggcatatcaaggatcagccgccagttgttgcaggggatggacct
attgggcttatcatggctcctacaagggaacttgttcaacagattcacagtgatataaag
aagtttactaaggtactgggtatcaggtgcgtgcctgtctatggtggttcaggtgttgct
caacaaatcagtgagttgaaacgtggtactgagatagtggtttgtactccaggtaggatg
attgatatactatgcaccagtagtgggaaaataactaacctgcggagagtcacttatttg
gtcatggatgaggctgatcgaatgtttgacatgggctttgaacctcaaatcacacgaatt
gttcagaatattcggccagatcgtcaaacagttctcttctctgctactttcccccgccag
gttgaaattctggcacgcaaggttttgaataaacctgtagaaatacaagttggcgggaga
agtgttgtgaacaaagacatatcacagctagttgaggtgaggccagaaaatgagaggttc
tttagactcttagaaatactgggcgaatggtatgagaaaggaaagatcttgatatttgtc
cattcacaggagaaatgtgattctttgttcaaggatctgctcaggcacggttacccatgt
ctttctcttcacggggctaaggatcagacagaccgtgaatccacaatttctgattttaaa
agcaatgtctgcaatttgttggttgcaacaagtattgctgcccggggattagatgtcaag
gagctcgaattggtgatcaattatgatgtttcaaaccactatgaagattatgtacatcgt
gttgggcgcactggccgagctggccgtaagggttgtgccattacatttatttctgaggaa
gaggcaaaatatgcaccagatctggtgaaagccttggagctatctgagcagactgttccc
gatgatctgaaagctcttgctgatagctttatggcgaaagtcaatcaaggactggagcaa
gcgcatgggactggttatggaggaagtggctttaagtttaatgaagaggaagatgaggtg
aggaaagcagcaaagaaagcgcaagccaaagaatatgggtttgaagaagacaagtcagat
tctgaagatgaagatgatggtattaggaaggcaggtgatgtctcacagcatcctgctctt
gctcagtttcttgctgcctcaaaagtgaatacttctgtgatgcacactcccatctcagct
gcccagctcattccaaatggtggactacctgttcctttgccaattctcccgacttcaaca
gtcttgcctgggacagggctaccccttgctacaactgatggggcagctcgagcagcatta
gctgctataaacctgcagcacaacttggcaaaaatacaatctgaagcattgccagagcat
tacgaggctgagttggaaataaatgatttcccccagaatgctcgctggaaagtcacacac
aaggaaaccttaggccccatttctgaatggactggagctgccattaccaccagggggcag
tttgtcaaccctggcaaaatcccaggacctggggaacgcaagctctacttgttcattgag
ggtcctagtgagcaatcagttaagagagccaaaacagaattgaagcgtgttttggaagac
atcacaaaccaggctttgcaacttcctggtggatctcaaccaggcaaatactctgtcgta
taag
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