Lotus japonicus: Lj2g3v2827810.1
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Entry
Lj2g3v2827810.1 CDS
T04348
Symbol
Lj2g3v2827810.1
Name
(Kazusa) -
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lja03009
]
Lj2g3v2827810.1 (Lj2g3v2827810.1)
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lj2g3v2827810.1 (Lj2g3v2827810.1)
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
Lj2g3v2827810.1 (Lj2g3v2827810.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
NACHT
Motif
LinkDB
All DBs
AA seq
539 aa
AA seq
DB search
MDSSEFPNKALTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDA
ATGSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIK
SMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLD
MGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATA
KQLESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHI
SVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQ
DPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDAPDVVPQIR
SAAKKDRDIMEKGVKAFVSYIRAYKEHHCSYIFRWRELEIGKLAMGHGLLRLPLVPEVKQ
NSLSTKGFEPVEDINFEDIKYRDKSREKQRKKNLQVKKEAKEKEPRPKKLSKTPNAQTD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggattcttccgagttcccaaacaaagcgttaaccagcacgcgtttctccgagctgaac
ccgccactatctgagccggttctccaagccctaacagactccgggttcgacttctgcacc
cctgttcaagccgccacgattcctttgctatgcagcttcaaggacgtcgccgtcgacgcc
gccaccggttccggcaaaaccctagcttttgtcctccctcttgttgagattcttcgccgc
tcttcccctaaacccaagcctcaccaggtactaggaataattatatctcctacaagggag
ctatcatcccagatatatcatgttgcacaacctttcatttcaactttagtgaatattaag
tccatgctcctcgttggtggagtggatgtaaaagcagacatgaagaaaattgaggaagaa
ggagtgaacatattgatcggcacacctgggcggttacatgacattatgaatcggatggat
atcttggattttaaagaacttgagatattgattttggatgaggctgatagactcttagat
atgggatttcagaagcagttaacttccattataactcagttgcccaagcttcgtagaact
ggtttgttctctgctactcaaactgaggctgtagaagagcttgctaaagcaggattgagg
aaccctgtgcgggttgaagttcgagcagaaactaaaagagcaaatgatcctgcaacagca
aaacaactagaatcttccaagacaccttcaggtcttcacattgagtacttggagtgtgag
gcagataagaagccatcacagctagtagatttccttgttaagaaccgctctaaaaaaatt
ataatatatttcatgacttgtgcttgcgttgacttttggggaactgtccttcctcacatt
tctgttttaaaaggcttctcattgatccctcttcatggaaagatgaagcagactgtcagg
gagaaagcacttgcttcatttacatccctttcaaatggaattcttctatgtaccgatgtt
gcagcacgtggacttgacataccaggtgtagattgtatagtgcagtacgatcctcctcaa
gatccaaatgttttcatacatagagttggtcgaacagctcggctgggtaaacaaggtcat
gctgttgtcttcttattaccaaaggaggattcttacgtagaattccttcgtatacgaaga
gttcctcttcaagagattagatgctctgatgatgcgcctgatgttgttcctcagattcgt
tctgctgcaaaaaaggatcgtgatatcatggagaagggtgttaaagcatttgtttcttac
atccgtgcttataaagagcatcactgctcttatatttttaggtggagagaacttgaaatt
gggaaattggctatgggacatggtttactgagacttcctttagtgccagaggtaaaacaa
aactctctttccaccaagggatttgaaccagttgaagatatcaattttgaggacattaag
tacagggataaatcgagagagaaacaacggaagaagaacctgcaagtaaagaaggaagct
aaggagaaagagccaagacctaaaaaactaagcaaaaccccaaatgcacaaactgac
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